MODOMICS: a database of RNA modification pathways, update 2008 - Anna Czerwoniec; Stanislaw Dunin-Horkawicz; Elzbieta Purta; Katarzyna H. Kaminska; Joanna M. Kasprzak; Janusz M. Bujnicki; Henri Grosjean; Kristian Rother (Nucleic Acids Res., 2009)

Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes. - Magdalena A. Machnicka; Katarzyna H. Kaminska; Stanislaw Dunin-Horkawicz; Janusz M. Bujnicki (BMC Bioinform., 2015)

FRAGMENTISE: A user-friendly, cross-platform tool to create and analyze comprehensive small-molecule fragment databases. - Joanna M. Zarnecka; Katarzyna H. Kaminska (J. Comput. Chem., 2023)