Prediction of Functional Sites Based on the Fuzzy Oil Drop Model. - Michal Brylinski; Katarzyna Prymula; Wiktor Jurkowski; Marek Kochanczyk; Ewa Stawowczyk; Leszek Konieczny; Irena Roterman (PLoS Comput. Biol., 2007)

Structural Entropy to Characterize Small Proteins (70 aa) and Their Interactions. - Katarzyna Prymula; Irena Roterman (Entropy, 2009)

Ab initio protein structure prediction - the hydrophobicity distribution analysis. - Giuseppe Evangelista; Giovanni Minervini; Fabio Polticelli; Maciej Malawski; Tomasz Szepieniec; Lukasz Flis; Katarzyna Prymula; Marek Kochanczyk; Ewa Matczynska; Zdzislaw Wisniowski; Kinga Salapa; Mateusz Banach; et al. (Bio Algorithms Med Syst., 2011)

Catalytic residues in hydrolases: analysis of methods designed for ligand-binding site prediction. - Katarzyna Prymula; Tomasz Jadczyk; Irena Roterman (J. Comput. Aided Mol. Des., 2011)

Semantic Integration for Model-based Life Science Applications. - Tomasz Gubala; Katarzyna Prymula; Piotr Nowakowski; Marian Bubak (SIMULTECH, 2013)