Automatic Segmentation and Classification of Fundus Eye Images for Glaucoma Diagnosis. - Katarzyna Stapor; Leslaw Pawlaczyk; Radim Chrástek; Heinrich Niemann; Georg Michelson (Bildverarbeitung für die Medizin, 2004)

Automatic Detection of Glaucomatous Changes Using Adaptive Thresholding and Neural Networks. - Katarzyna Stapor; Leslaw Pawlaczyk; Radim Chrástek; Georg Michelson (International Conference on Computational Science, 2004)

Segmentation of Fundus Eye Images Using Methods of Mathematical Morphology for Glaucoma Diagnosis. - Katarzyna Stapor; Adam Switonski; Radim Chrástek; Georg Michelson (International Conference on Computational Science, 2004)

Mathematical Morphology and Support Vector Machines for Diagnosis of Glaucoma on Fundus eye Images. - Katarzyna Stapor; Adrian Brueckner; Adam Switonski (ICCVG, 2004)

Mean Shift Segmentation, Genetic Algorithms and Support Vector Machines for Identification of Glaucoma in Fundus Eye Images. - Katarzyna Stapor; Adrian Brueckner (CORES, 2005)

Kernels for Chemical Compounds in Biological Screening. - Karol Kozak; Marta Kozak; Katarzyna Stapor (ICANNGA (2), 2007)

Classes of Kernels for Hit Definition in Compound Screening. - Karol Kozak; Katarzyna Stapor (ICAISC, 2008)

Optimization of the SVM Screening Kernel-Application to Hit Definition in Compound Screening. - Karol Kozak; Marta Kozak; Katarzyna Stapor (Computer Recognition Systems 2, 2008)

A New Feature Extraction Method Based on the Partial Least Squares Algorithm and Its Applications. - Pawel Blaszczyk; Katarzyna Stapor (Computer Recognition Systems 3, 2009)

Protein Fold Recognition with Combined SVM-RDA Classifier. - Wieslaw Chmielnicki; Katarzyna Stapor (HAIS (1), 2010)

An Efficient Multi-class Support Vector Machine Classifier for Protein Fold Recognition. - Wieslaw Chmielnicki; Katarzyna Stapor; Irena Roterman-Konieczna (IWPACBB, 2010)

A combined SVM-RDA classifier for protein fold recognition. - Wieslaw Chmielnicki; Katarzyna Stapor (Bio Algorithms Med Syst., 2010)

An Effective Feature Selection Algorithm Based on the Class Similarity Used with a SVM-RDA Classifier to Protein Fold Recognition. - Wieslaw Chmielnicki; Katarzyna Stapor (HAIS (2), 2011)

A New Approach to Multi-class SVM-Based Classification Using Error Correcting Output Codes. - Wieslaw Chmielnicki; Katarzyna Stapor (Computer Recognition Systems 4, 2011)

Protein fold classification based on machine learning paradigm - a review. - Katarzyna Stapor (Bio Algorithms Med Syst., 2012)

An improved protein fold recognition with support vector machines. - Wieslaw Chmielnicki; Irena Roterman-Konieczna; Katarzyna Stapor (Expert Syst. J. Knowl. Eng., 2012)

A hybrid discriminative/generative approach to protein fold recognition. - Wieslaw Chmielnicki; Katarzyna Stapor (Neurocomputing, 2012)

Combining One-Versus-One and One-Versus-All Strategies to Improve Multiclass SVM Classifier. - Wieslaw Chmielnicki; Katarzyna Stapor (CORES, 2015)

A method of predicting the secondary protein structure based on dictionaries. - Irena Roterman-Konieczna; Piotr Fabian; Katarzyna Stapor (Bio Algorithms Med Syst., 2015)

Statistical dictionaries for hypothetical in silico model of the early-stage intermediate in protein folding. - Barbara Kalinowska; Piotr Fabian; Katarzyna Stapor; Irena Roterman (J. Comput. Aided Mol. Des., 2015)

Classification of Protein Interactions Based on Sparse Discriminant Analysis and Energetic Features. - Katarzyna Stapor; Piotr Fabian (CISIM, 2016)

Using the one-versus-rest strategy with samples balancing to improve pairwise coupling classification. - Wieslaw Chmielnicki; Katarzyna Stapor (Int. J. Appl. Math. Comput. Sci., 2016)

Evaluating and Comparing Classifiers: Review, Some Recommendations and Limitations. - Katarzyna Stapor (CORES, 2017)

Developing an SVM classifier for extended ES protein structure prediction. - Piotr Fabian; Katarzyna Stapor (FedCSIS, 2017)

Evaluation of classifiers: current methods and future research directions. - Katarzyna Stapor (FedCSIS (Position Papers), 2017)

Deep Learning Features for Face Age Estimation: Better Than Human? - Krzysztof Kotowski; Katarzyna Stapor (BDAS, 2018)

Backbone dihedral angles prediction servers for protein early-stage structure prediction. - Tomasz Smolarczyk; Katarzyna Stapor; Irena Roterman-Konieczna (Bio Algorithms Med Syst., 2019)

Machine Learning Methods for the Protein Fold Recognition Problem. - Katarzyna Stapor; Irena Roterman-Konieczna; Piotr Fabian (Machine Learning Paradigms, 2019)

The Status of Edge Strands in Ferredoxin-Like Fold. - Mateusz Banach; Piotr Fabian; Katarzyna Stapor; Leszek Konieczny; Magdalena Ptak-Kaczor; Irena Roterman (Symmetry, 2020)

Alternative Hydrophobic Core in Proteins - The Effect of Specific Synergy. - Piotr Fabian; Katarzyna Stapor; Mateusz Banach; Magdalena Ptak-Kaczor; Leszek Konieczny; Irena Roterman (Symmetry, 2020)

Introduction to Probabilistic and Statistical Methods with Examples in R - Katarzyna Stapor (Springer, 2020)

How to design the fair experimental classifier evaluation. - Katarzyna Stapor; Pawel Ksieniewicz; Salvador García 001; Michal Wozniak 001 (Appl. Soft Comput., 2021)

Divergence Entropy-Based Evaluation of Hydrophobic Core in Aggressive and Resistant Forms of Transthyretin. - Mateusz Banach; Katarzyna Stapor; Piotr Fabian; Leszek Konieczny; Irena Roterman (Entropy, 2021)

ProteinUnet - An efficient alternative to SPIDER3-single for sequence-based prediction of protein secondary structures. - Krzysztof Kotowski; Tomasz Smolarczyk; Irena Roterman-Konieczna; Katarzyna Stapor (J. Comput. Chem., 2021)

Lightweight ProteinUnet2 network for protein secondary structure prediction: a step towards proper evaluation. - Katarzyna Stapor; Krzysztof Kotowski; Tomasz Smolarczyk; Irena Roterman (BMC Bioinform., 2022)

The importance of ocular artifact removal in single-trial ERP analysis: The case of the N250 in face learning. - Krzysztof Kotowski; Jeremi K. Ochab; Katarzyna Stapor; Werner Sommer (Biomed. Signal Process. Control., 2023)

Ab initio protein structure prediction: the necessary presence of external force field as it is delivered by Hsp40 chaperone. - Irena Roterman; Katarzyna Stapor; Leszek Konieczny (BMC Bioinform., 2023)

Role of environmental specificity in CASP results. - Irena Roterman; Katarzyna Stapor; Leszek Konieczny (BMC Bioinform., 2023)

The outer-membrane componentof the multi-drug efflux system -a structural analysis based onhydrophobicity distribution. - Irena Roterman; Leszek Konieczny; Katarzyna Stapor (Bio Algorithms Med Syst., 2024)

Protein intrinsic disorder prediction using Attention U-Net and ProtTrans protein language model. - Krzysztof Kotowski; Irena Roterman; Katarzyna Stapor (CoRR, 2024)

DisorderUnetLM: Validating ProteinUnet for efficient protein intrinsic disorder prediction. - Krzysztof Kotowski; Irena Roterman; Katarzyna Stapor (Comput. Biol. Medicine, 2025)