The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets. - Damian Szklarczyk; Annika L. Gable; Katerina C. Nastou; David Lyon; Rebecca Kirsch; Sampo Pyysalo; Nadezhda T. Doncheva; Marc Legeay; Tao Fang; Peer Bork; Lars Juhl Jensen; Christian von Mering (Nucleic Acids Res., 2021)

The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest. - Damian Szklarczyk; Rebecca Kirsch; Mikaela Koutrouli; Katerina C. Nastou; Farrokh Mehryary; Radja Hachilif; Annika L. Gable; Tao Fang; Nadezhda T. Doncheva; Sampo Pyysalo; Peer Bork; Lars Juhl Jensen; et al. (Nucleic Acids Res., 2023)

Improving dictionary-based named entity recognition with deep learning. - Katerina C. Nastou; Mikaela Koutrouli; Sampo Pyysalo; Lars Juhl Jensen (Bioinform., 2024)

RegulaTome: a corpus of typed, directed, and signed relations between biomedical entities in the scientific literature. - Katerina C. Nastou; Farrokh Mehryary; Tomoko Ohta; Jouni Luoma; Sampo Pyysalo; Lars Juhl Jensen (Database J. Biol. Databases Curation, 2024)

FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data. - Mikaela Koutrouli; Katerina C. Nastou; Pau Piera Líndez; Robbin Bouwmeester; Simon Rasmussen; Lennart Martens; Lars Juhl Jensen (Bioinform., 2024)

LSD600: the first corpus of biomedical abstracts annotated with lifestyle-disease relations. - Esmaeil Nourani; Evangelia-Mantelena Makri; Xiqing Mao; Sampo Pyysalo; Søren Brunak; Katerina C. Nastou; Lars Juhl Jensen (Database J. Biol. Databases Curation, 2025)