Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network. - Wen-Yu Chung; Réka Albert; István Albert; Anton Nekrutenko; Kateryna D. Makova (BMC Bioinform., 2006)

A Macaque's-Eye View of Human Insertions and Deletions: Differences in Mechanisms. - Erika M. Kvikstad; Svitlana Tyekucheva; Francesca Chiaromonte; Kateryna D. Makova (PLoS Comput. Biol., 2007)

Integration and Fixation Preferences of Human and Mouse Endogenous Retroviruses Uncovered with Functional Data Analysis. - Rebeca Campos-Sánchez; Marzia A. Cremona; Alessia Pini; Francesca Chiaromonte; Kateryna D. Makova (PLoS Comput. Biol., 2016)

IWTomics: testing high-resolution sequence-based 'Omics' data at multiple locations and scales. - Marzia A. Cremona; Alessia Pini; Fabio Cumbo; Kateryna D. Makova; Francesca Chiaromonte; Simone Vantini (Bioinform., 2018)

RecoverY: k-mer-based read classification for Y-chromosome-specific sequencing and assembly. - Samarth Rangavittal; Robert S. Harris; Monika Cechova; Marta Tomaszkiewicz; Rayan Chikhi; Kateryna D. Makova; Paul Medvedev (Bioinform., 2018)

Functional data analysis for computational biology. - Marzia A. Cremona; Hongyan Xu; Kateryna D. Makova; Matthew Reimherr; Francesca Chiaromonte; Pedro Madrigal (Bioinform., 2019)

Noise-cancelling repeat finder: uncovering tandem repeats in error-prone long-read sequencing data. - Robert S. Harris; Monika Cechova; Kateryna D. Makova (Bioinform., 2019)

Family reunion via error correction: an efficient analysis of duplex sequencing data. - Nicholas Stoler; Barbara Arbeithuber; Gundula Povysil; Monika Heinzl; Renato Salazar; Kateryna D. Makova; Irene Tiemann-Boege; Anton Nekrutenko (BMC Bioinform., 2020)