Gene prediction in metagenomic fragments: A large scale machine learning approach. - Katharina Jasmin Hoff; Maike Tech; Thomas Lingner; Rolf Daniel; Burkhard Morgenstern; Peter Meinicke (BMC Bioinform., 2008)

Orphelia: predicting genes in metagenomic sequencing reads. - Katharina Jasmin Hoff; Thomas Lingner; Peter Meinicke; Maike Tech (Nucleic Acids Res., 2009)

WebAUGUSTUS - a web service for training AUGUSTUS and predicting genes in eukaryotes. - Katharina Jasmin Hoff; Mario Stanke (Nucleic Acids Res., 2013)

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS. - Katharina Jasmin Hoff; Simone Lange; Alexandre Lomsadze; Mark Borodovsky; Mario Stanke (Bioinform., 2016)

VARUS: sampling complementary RNA reads from the sequence read archive. - Mario Stanke; Willy Bruhn; Felix Becker; Katharina Jasmin Hoff (BMC Bioinform., 2019)

MakeHub: Fully Automated Generation of UCSC Genome Browser Assembly Hubs. - Katharina Jasmin Hoff (Genom. Proteom. Bioinform., 2019)

TSEBRA: transcript selector for BRAKER. - Lars Gabriel; Katharina Jasmin Hoff; Tomás Bruna; Mark Borodovsky; Mario Stanke (BMC Bioinform., 2021)

Galba: genome annotation with miniprot and AUGUSTUS. - Tomás Bruna; Heng Li; Joseph Guhlin; Daniel Honsel; Steffen Herbold; Mario Stanke; Natalia Nenasheva; Matthis Ebel; Lars Gabriel; Katharina Jasmin Hoff (BMC Bioinform., 2023)