EmbryoMiner: A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos. - Benjamin Schott; Manuel Traub; Cornelia Schlagenhauf; Masanari Takamiya; Thomas Antritter; Andreas Bartschat; Katharina Löffler; Denis Blessing; Jens C. Otte; Andrei Kobitski; G. Ulrich Nienhaus; Uwe Strähle; et al. (PLoS Comput. Biol., 2018)

Cell Segmentation and Tracking using Distance Transform Predictions and Movement Estimation with Graph-Based Matching. - Tim Scherr; Katharina Löffler; Moritz Böhland; Ralf Mikut (CoRR, 2020)

EmbedTrack - Simultaneous Cell Segmentation and Tracking Through Learning Offsets and Clustering Bandwidths. - Katharina Löffler; Ralf Mikut (IEEE Access, 2022)

ciscNet - A Single-Branch Cell Instance Segmentation and Classification Network. - Moritz Böhland; Oliver Neumann; Marcel P. Schilling; Markus Reischl; Ralf Mikut; Katharina Löffler; Tim Scherr (CoRR, 2022)

CoNIC Challenge: Pushing the Frontiers of Nuclear Detection, Segmentation, Classification and Counting. - Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Martin Weigert 001; Uwe Schmidt; Wenhua Zhang; Jun Zhang 018; Sen Yang 006; Jinxi Xiang; Xiyue Wang; Josef Lorenz Rumberger; Elias Baumann; et al. (CoRR, 2023)

Multiple Object Tracking in Light Microscopy Images Using Graph-based and Deep Learning Methods. - Katharina Löffler (2023)

CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting. - Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Martin Weigert 001; Uwe Schmidt; Wenhua Zhang; Jun Zhang 018; Sen Yang 006; Jinxi Xiang; Xiyue Wang; Josef Lorenz Rumberger; Elias Baumann; et al. (Medical Image Anal., 2024)