Tracking global changes induced in the CD4 T-cell receptor repertoire by immunization with a complex antigen using short stretches of CDR3 protein sequence. - Niclas Thomas; Katharine Best; Mattia Cinelli; Shlomit Reich-Zeliger; Hilah Gal; Eric Shifrut; Asaf Madi; Nir Friedman; John Shawe-Taylor; Benny Chain (Bioinform., 2014)

Feature selection using a one dimensional naïve Bayes' classifier increases the accuracy of support vector machine classification of CDR3 repertoires. - Mattia Cinelli; Yuxin Sun; Katharine Best; James M. Heather; Shlomit Reich-Zeliger (Bioinform., 2017)

Zika virus dynamics: Effects of inoculum dose, the innate immune response and viral interference. - Katharine Best; Dan H. Barouch; Jérémie Guedj; Ruy M. Ribeiro; Alan S. Perelson (PLoS Comput. Biol., 2021)