A Hidden Markov Model for Predicting protein Interfaces. - Cao D. Nguyen; Katheleen J. Gardiner; Krzysztof J. Cios (J. Bioinform. Comput. Biol., 2007)

Prediction of Protein Functions from Protein Interaction Networks: A Naïve Bayes Approach. - Cao D. Nguyen; Katheleen J. Gardiner; Duong Nguyen; Krzysztof J. Cios (PRICAI, 2008)

CLusFCM: an Algorithm for Predicting protein Functions Using homologies and protein Interactions. - Cao D. Nguyen; Michael Mannino; Katheleen J. Gardiner; Krzysztof J. Cios (J. Bioinform. Comput. Biol., 2008)

Discovering relational knowledge from two disjoint sets of literatures using inductive Logic Programming. - Supphachai Thaicharoen; Tom Altman; Katheleen J. Gardiner; Krzysztof J. Cios (CIDM, 2009)

miDivCon: Framework and method for Multiple Instance Learning. - Cao D. Nguyen; Dat T. Nguyen; Krzysztof J. Cios; Katheleen J. Gardiner; Alberto C. Costa (ISDA, 2010)

HIGEDA: a hierarchical gene-set genetics based algorithm for finding subtle motifs in biological sequences. - Thanh Le; Tom Altman; Katheleen J. Gardiner (Bioinform., 2010)

Protein annotation from protein interaction networks and Gene Ontology. - Cao D. Nguyen; Katheleen J. Gardiner; Krzysztof J. Cios (J. Biomed. Informatics, 2011)

Probability-based Imputation Method for Fuzzy Cluster Analysis of Gene Expression Microarray Data. - Thanh Le; Tom Altman; Katheleen J. Gardiner (ITNG, 2012)

Mice Protein Expression. - Clara Higuera; Katheleen J. Gardiner; Krzysztof J. Cios (UCI Machine Learning Repository, 2015)

RPPAware: A software suite to preprocess, analyze and visualize reverse phase protein array data. - A. Ranjitha Dhanasekaran; Katheleen J. Gardiner (J. Bioinform. Comput. Biol., 2018)