Significant Subgraph Detection in Multi-omics Networks for Disease Pathway Identification. - Mohamed Abdel-Hafiz; Mesbah Najafi; Shahab Helmi; Katherine A. Pratte; Yonghua Zhuang; Weixuan Liu; Katerina J. Kechris; Russell Bowler; Leslie Lange; Farnoush Banaei Kashani (Frontiers Big Data, 2022)

NetSHy: network summarization via a hybrid approach leveraging topological properties. - Thao Vu; Elizabeth Litkowski; Weixuan Liu; Katherine A. Pratte; Leslie Lange; Russell Bowler; Farnoush Banaei Kashani; Katerina J. Kechris (Bioinform., 2023)

Smccnet 2.0: a comprehensive tool for multi-omics network inference with shiny visualization. - Weixuan Liu; Thao Vu; Iain R. Konigsberg; Katherine A. Pratte; Yonghua Zhuang; Katerina J. Kechris (BMC Bioinform., 2024)

A generalized higher-order correlation analysis framework for multi-omics network inference. - Weixuan Liu; Katherine A. Pratte; Peter J. Castaldi; Craig P. Hersh; Russell P. Bowler; Farnoush Banaei Kashani; Katerina J. Kechris (PLoS Comput. Biol., 2025)