Combining Unification Algorithms for Confined Regular Equational Theories. - Katherine A. Yelick (RTA, 1985)

Unification in Combinations of Collapse-Free Regular Theories. - Katherine A. Yelick (J. Symb. Comput., 1987)

Moded Type Systems for Logic Programming. - Katherine A. Yelick; Joseph L. Zachary (POPL, 1989)

Parallel Completion. - Katherine A. Yelick (Dagstuhl Seminar on Parallelization in Inference Systems, 1990)

Using Moded Type Systems to Support Abstraction in Logic Programs. - Joseph L. Zachary; Katherine A. Yelick (Types in Logic Programming, 1992)

A Parallel Completion Procedure for Term Rewriting Systems. - Katherine A. Yelick; Stephen J. Garland (CADE, 1992)

Programming Models for Irregular Applications. - Katherine A. Yelick (SIGPLAN Workshop, 1992)

Parallel timing simulation on a distributed memory multiprocessor. - Chih-Po Wen; Katherine A. Yelick (ICCAD, 1993)

Implementing an Irregular Application on a Distributed Memory Multiprocessor. - Soumen Chakrabarti; Katherine A. Yelick (PPoPP, 1993)

On the Correctness of a Distributed Memory Gröbner basis Algorithm. - Soumen Chakrabarti; Katherine A. Yelick (RTA, 1993)

Parallel programming in Split-C. - David E. Culler; Andrea C. Dusseau; Seth Copen Goldstein; Arvind Krishnamurthy; Steven Lumetta; Thorsten von Eicken; Katherine A. Yelick (SC, 1993)

Common runtime support for high-performance parallel languages. - Geoffrey C. Fox; Sanjay Ranka; Michael L. Scott; Allen D. Malony; James C. Browne; Marina C. Chen; Alok N. Choudhary; Thomas E. Cheatham; Janice E. Cuny; Rudolf Eigenmann; Amr F. Fahmy; Ian T. Foster; et al. (SC, 1993)

Connected components on distributed memory machines. - Arvind Krishnamurthy; Steven S. Lumetta; David E. Culler; Katherine A. Yelick (Parallel Algorithms, 1994)

Optimizing Parallel SPMD Programs. - Arvind Krishnamurthy; Katherine A. Yelick (LCPC, 1994)

Distributed Data Structures and Algorithms for Gröbner Basis Computation. - Soumen Chakrabarti; Katherine A. Yelick (LISP Symb. Comput., 1994)

Portable Runtime Support for Asynchronous Simulation. - Chih-Po Wen; Katherine A. Yelick (ICPP (2), 1995)

Empirical Evaluation of the CRAY-T3D: A Compiler Perspective. - Remzi H. Arpaci; David E. Culler; Arvind Krishnamurthy; Steve G. Steinberg; Katherine A. Yelick (ISCA, 1995)

Runtime Support for Portable Distributed Data Structures. - Chih-Po Wen; Soumen Chakrabarti; Etienne Deprit; Arvind Krishnamurthy; Katherine A. Yelick (LCR, 1995)

Optimizing Parallel Programs with Explicit Synchronization. - Arvind Krishnamurthy; Katherine A. Yelick (PLDI, 1995)

Portable Parallel Irregular Applications. - Katherine A. Yelick; Chih-Po Wen; Soumen Chakrabarti; Etienne Deprit; Jeff A. Jones; Arvind Krishnamurthy (PSLS, 1995)

Parallelizing the Phylogeny Problem. - Jeff A. Jones; Katherine A. Yelick (SC, 1995)

Modeling the Benefits of Mixed Data and Task Parallelism. - Soumen Chakrabarti; James Demmel; Katherine A. Yelick (SPAA, 1995)

Evaluation of Architectural Support for Global Address-Based Communication in Large-Scale Parallel Machines. - Arvind Krishnamurthy; Klaus E. Schauser; Chris J. Scheiman; Randolph Y. Wang; David E. Culler; Katherine A. Yelick (ASPLOS, 1996)

Performance Modeling and Composition: A Case Study in Cell Simulation. - Steve G. Steinberg; Jun Yang 001; Katherine A. Yelick (IPPS, 1996)

Systems Support for Irregular Parallel Applications (Abstract). - Katherine A. Yelick (IRREGULAR, 1996)

Analyses and Optimizations for Shared Address Space Programs. - Arvind Krishnamurthy; Katherine A. Yelick (J. Parallel Distributed Comput., 1996)

Intelligent RAM (IRAM): The Industrial Setting, Applications and Architectures. - David A. Patterson 001; Krste Asanovic; Aaron B. Brown; Richard Fromm; Jason Golbus; Benjamin Gribstad; Kimberly Keeton; Christoforos E. Kozyrakis; David R. Martin 001; Stylianos Perissakis; Randi Thomas; Noah Treuhaft; et al. (ICCD, 1997)

The Energy Efficiency of IRAM Architectures. - Richard Fromm; Stylianos Perissakis; Neal Cardwell; Christoforos E. Kozyrakis; Bruce McGaughy; David A. Patterson 001; Thomas E. Anderson; Katherine A. Yelick (ISCA, 1997)

Scalable Processors in the Billion-Transistor Era: IRAM. - Christoforos E. Kozyrakis; Stylianos Perissakis; David A. Patterson 001; Thomas E. Anderson; Krste Asanovic; Neal Cardwell; Richard Fromm; Jason Golbus; Benjamin Gribstad; Kimberly Keeton; Randi Thomas; Noah Treuhaft; et al. (Computer, 1997)

Models and Scheduling Algorithms for Mixed Data and Task Parallel Programs. - Soumen Chakrabarti; James Demmel; Katherine A. Yelick (J. Parallel Distributed Comput., 1997)

A case for intelligent RAM. - David A. Patterson 001; Thomas E. Anderson; Neal Cardwell; Richard Fromm; Kimberly Keeton; Christoforos E. Kozyrakis; Randi Thomas; Katherine A. Yelick (IEEE Micro, 1997)

Titanium: A High-performance Java Dialect. - Katherine A. Yelick; Luigi Semenzato; Geoff Pike; Carleton Miyamoto; Ben Liblit; Arvind Krishnamurthy; Paul N. Hilfinger; Susan L. Graham; David Gay; Phillip Colella; Alex Aiken (Concurr. Pract. Exp., 1998)

Cluster I/O with River: Making the Fast Case Common. - Remzi H. Arpaci-Dusseau; Eric Anderson; Noah Treuhaft; David E. Culler; Joseph M. Hellerstein; David A. Patterson 001; Katherine A. Yelick (IOPADS, 1999)

Optimizing Sparse Matrix Vector Multiplication on SMP. - Eun-Jin Im; Katherine A. Yelick (PP, 1999)

Performance Analysis of an H.263 Video Encoder for VIRAM. - Thinh P. Q. Nguyen; Avideh Zakhor; Katherine A. Yelick (ICIP, 2000)

Exploiting On-Chip Memory Bandwidth in the VIRAM Compiler. - David Judd; Katherine A. Yelick; Christoforos E. Kozyrakis; David R. Martin 001; David A. Patterson 001 (Intelligent Memory Systems, 2000)

Optimizing Sparse Matrix Computations for Register Reuse in SPARSITY. - Eun-Jin Im; Katherine A. Yelick (International Conference on Computational Science (1), 2001)

Hardware/compiler codevelopment for an embedded media processor. - Christoforos E. Kozyrakis; David Judd; Joseph Gebis; Samuel Williams 001; David A. Patterson 001; Katherine A. Yelick (Proc. IEEE, 2001)

Memory-Intensive Benchmarks: IRAM vs. Cache-Based Machines. - Brian R. Gaeke; Parry Husbands; Xiaoye S. Li; Leonid Oliker; Katherine A. Yelick; Rupak Biswas (IPDPS, 2002)

Performance optimizations and bounds for sparse matrix-vector multiply. - Rich Vuduc; James Demmel; Katherine A. Yelick; Shoaib Kamil 001; Rajesh Nishtala; Benjamin C. Lee (SC, 2002)

ROC-1: Hardware Support for Recovery-Oriented Computing. - David Oppenheimer; Aaron B. Brown; James Beck; Daniel Hettena; Jon Kuroda; Noah Treuhaft; David A. Patterson 001; Katherine A. Yelick (IEEE Trans. Computers, 2002)

Memory Hierarchy Optimizations and Performance ounds for Sparse A. - Rich Vuduc; Attila Gyulassy; James Demmel; Katherine A. Yelick (International Conference on Computational Science, 2003)

A performance analysis of the Berkeley UPC compiler. - Parry Husbands; Costin Iancu; Katherine A. Yelick (ICS, 2003)

An Evaluation of Current High-Performance Networks. - Christian Bell; Dan Bonachea; Yannick Cote; Jason Duell; Paul Hargrove; Parry Husbands; Costin Iancu; Michael L. Welcome; Katherine A. Yelick (IPDPS, 2003)

Polynomial-Time Algorithms for Enforcing Sequential Consistency in SPMD Programs with Arrays. - Wei-Yu Chen; Arvind Krishnamurthy; Katherine A. Yelick (LCPC, 2003)

Type Systems for Distributed Data Sharing. - Ben Liblit; Alex Aiken; Katherine A. Yelick (SAS, 2003)

Performance Models for Evaluation and Automatic Tuning of Symmetric Sparse Matrix-Vector Multiply. - Benjamin C. Lee; Richard W. Vuduc; James Demmel; Katherine A. Yelick (ICPP, 2004)

Evaluating support for global address space languages on the Cray X1. - Christian Bell; Wei-Yu Chen; Dan Bonachea; Katherine A. Yelick (ICS, 2004)

Identifying Performance Bottlenecks on Modern Microarchitectures Using an Adaptable Probe. - Gorden Griem; Leonid Oliker; John Shalf; Katherine A. Yelick (IPDPS, 2004)

Array Prefetching for Irregular Array Accesses in Titanium. - Jimmy Su; Katherine A. Yelick (IPDPS, 2004)

Performance Tuning of Matrix Triple Products Based on Matrix Structure. - Eun-Jin Im; Ismail Bustany; Cleve Ashcraft; James Demmel; Katherine A. Yelick (PARA, 2004)

Sparsity: Optimization Framework for Sparse Matrix Kernels. - Eun-Jin Im; Katherine A. Yelick; Richard W. Vuduc (Int. J. High Perform. Comput. Appl., 2004)

Special Issue on Automatic Performance Tuning. - Katherine A. Yelick (Int. J. High Perform. Comput. Appl., 2004)

Impact of modern memory subsystems on cache optimizations for stencil computations. - Shoaib Kamil 001; Parry Husbands; Leonid Oliker; John Shalf; Katherine A. Yelick (Memory System Performance, 2005)

Communication Optimizations for Fine-Grained UPC Applications. - Wei-Yu Chen; Costin Iancu; Katherine A. Yelick (IEEE PACT, 2005)

Automatic Support for Irregular Computations in a High-Level Language. - Jimmy Su; Katherine A. Yelick (IPDPS, 2005)

Titanium Performance and Potential: An NPB Experimental Study. - Kaushik Datta; Dan Bonachea; Katherine A. Yelick (LCPC, 2005)

Concurrency Analysis for Parallel Programs with Textually Aligned Barriers. - Amir Kamil; Katherine A. Yelick (LCPC, 2005)

Language innovations for HPCS. - Katherine A. Yelick (PPoPP, 2005)

Making Sequential Consistency Practical in Titanium. - Amir Kamil; Jimmy Su; Katherine A. Yelick (SC, 2005)

Self-Adapting Linear Algebra Algorithms and Software. - Richard Carl Demmel; Jack J. Dongarra; Victor Eijkhout; Erika Fuentes; Antoine Petitet; Richard W. Vuduc; R. Clint Whaley; Katherine A. Yelick (Proc. IEEE, 2005)

Implicit and explicit optimizations for stencil computations. - Shoaib Kamil 001; Kaushik Datta; Samuel Williams 001; Leonid Oliker; John Shalf; Katherine A. Yelick (Memory System Performance and Correctness, 2006)

The potential of the cell processor for scientific computing. - Samuel Williams 001; John Shalf; Leonid Oliker; Shoaib Kamil 001; Parry Husbands; Katherine A. Yelick (Conf. Computing Frontiers, 2006)

Performance Analysis of a High Energy Colliding Beam Simulation Code on Four HPC Architectures. - Hongzhang Shan; Ji Qiang; Erich Strohmaier; Katherine A. Yelick (ICPP, 2006)

Optimizing bandwidth limited problems using one-sided communication and overlap. - Christian Bell; Dan Bonachea; Rajesh Nishtala; Katherine A. Yelick (IPDPS, 2006)

Compilation Techniques for Partitioned Global Address Space Languages. - Katherine A. Yelick (LCPC, 2006)

Performance Advantages of Partitioned Global Address Space Languages. - Katherine A. Yelick (PVM/MPI, 2006)

Poster reception - Optimized collectives for PGAS languages with one-sided communication. - Dan Bonachea; Paul Hargrove; Rajesh Nishtala; Michael L. Welcome; Katherine A. Yelick (SC, 2006)

Particles and contiuum - Performance modeling and optimization of a high energy colliding beam simulation code. - Hongzhang Shan; Erich Strohmaier; Ji Qiang; David H. Bailey; Katherine A. Yelick (SC, 2006)

Distributed Immersed Boundary Simulation in Titanium. - Edward Givelberg; Katherine A. Yelick (SIAM J. Sci. Comput., 2006)

Automatic nonblocking communication for partitioned global address space programs. - Wei-Yu Chen; Dan Bonachea; Costin Iancu; Katherine A. Yelick (ICS, 2007)

Productivity and performance using partitioned global address space languages. - Katherine A. Yelick; Dan Bonachea; Wei-Yu Chen; Phillip Colella; Kaushik Datta; Jason Duell; Susan L. Graham; Paul Hargrove; Paul N. Hilfinger; Parry Husbands; Costin Iancu; Amir Kamil; et al. (PASCO, 2007)

Automatic Communication Performance Debugging in PGAS Languages. - Jimmy Su; Katherine A. Yelick (LCPC, 2007)

Hierarchical Pointer Analysis for Distributed Programs. - Amir Kamil; Katherine A. Yelick (SAS, 2007)

Multi-threading and one-sided communication in parallel LU factorization. - Parry Husbands; Katherine A. Yelick (SC, 2007)

An adaptive mesh refinement benchmark for modern parallel programming languages. - Tong Wen; Jimmy Su; Phillip Colella; Katherine A. Yelick; Noel Keen (SC, 2007)

Deadlock-free scheduling of X10 computations with bounded resources. - Shivali Agarwal; Rajkishore Barik; Dan Bonachea; Vivek Sarkar; R. K. Shyamasundar; Katherine A. Yelick (SPAA, 2007)

When cache blocking of sparse matrix vector multiply works and why. - Rajesh Nishtala; Richard W. Vuduc; James Demmel; Katherine A. Yelick (Appl. Algebra Eng. Commun. Comput., 2007)

Parallel Languages and Compilers: Perspective From the Titanium Experience. - Katherine A. Yelick; Paul N. Hilfinger; Susan L. Graham; Dan Bonachea; Jimmy Su; Amir Kamil; Kaushik Datta; Phillip Colella; Tong Wen (Int. J. High Perform. Comput. Appl., 2007)

Scientific Computing Kernels on the Cell Processor. - Samuel Williams 001; John Shalf; Leonid Oliker; Shoaib Kamil 001; Parry Husbands; Katherine A. Yelick (Int. J. Parallel Program., 2007)

Languages for High-Productivity Computing: the DARPA HPCS Language Project. - Ewing L. Lusk; Katherine A. Yelick (Parallel Process. Lett., 2007)

Performance portable optimizations for loops containing communication operations. - Costin Iancu; Wei Chen 011; Katherine A. Yelick (ICS, 2008)

Avoiding communication in sparse matrix computations. - James Demmel; Mark Hoemmen; Marghoob Mohiyuddin; Katherine A. Yelick (IPDPS, 2008)

Lattice Boltzmann simulation optimization on leading multicore platforms. - Samuel Williams 001; Jonathan Carter 002; Leonid Oliker; John Shalf; Katherine A. Yelick (IPDPS, 2008)

Programming models for petascale to exascale. - Katherine A. Yelick (IPDPS, 2008)

Stencil computation optimization and auto-tuning on state-of-the-art multicore architectures. - Kaushik Datta; Mark Murphy; Vasily Volkov; Samuel Williams 001; Jonathan Carter 002; Leonid Oliker; David A. Patterson 001; John Shalf; Katherine A. Yelick (SC, 2008)

DARPA's HPCS Program- History, Models, Tools, Languages. - Jack J. Dongarra; Robert B. Graybill; William J. Harrod; Robert F. Lucas; Ewing L. Lusk; Piotr Luszczek; Janice McMahon; Allan Snavely; Jeffrey S. Vetter; Katherine A. Yelick; Sadaf R. Alam; Roy L. Campbell; et al. (Adv. Comput., 2008)

Improving Memory Subsystem Performance Using ViVA: Virtual Vector Architecture. - Joseph Gebis; Leonid Oliker; John Shalf; Samuel Williams 001; Katherine A. Yelick (ARCS, 2009)

Scheduling dynamic parallelism on accelerators. - Filip Blagojevic; Costin Iancu; Katherine A. Yelick; Matthew Curtis-Maury; Dimitrios S. Nikolopoulos; Benjamin Rose (Conf. Computing Frontiers, 2009)

Scaling communication-intensive applications on BlueGene/P using one-sided communication and overlap. - Rajesh Nishtala; Paul Hargrove; Dan Bonachea; Katherine A. Yelick (IPDPS, 2009)

Ten ways to waste a parallel computer. - Katherine A. Yelick (ISCA, 2009)

Enforcing Textual Alignment of Collectives Using Dynamic Checks. - Amir Kamil; Katherine A. Yelick (LCPC, 2009)

Memory-efficient optimization of Gyrokinetic particle-to-grid interpolation for multicore processors. - Kamesh Madduri; Samuel Williams 001; Stéphane Ethier; Leonid Oliker; John Shalf; Erich Strohmaier; Katherine A. Yelick (SC, 2009)

Minimizing communication in sparse matrix solvers. - Marghoob Mohiyuddin; Mark Hoemmen; James Demmel; Katherine A. Yelick (SC, 2009)

A view of the parallel computing landscape. - Krste Asanovic; Rastislav Bodík; James Demmel; Tony M. Keaveny; Kurt Keutzer; John Kubiatowicz; Nelson Morgan; David A. Patterson 001; Koushik Sen; John Wawrzynek; David Wessel; Katherine A. Yelick (Commun. ACM, 2009)

Technical perspective - Abstraction for parallelism. - Katherine A. Yelick (Commun. ACM, 2009)

Optimization of a lattice Boltzmann computation on state-of-the-art multicore platforms. - Samuel Williams 001; Jonathan Carter 002; Leonid Oliker; John Shalf; Katherine A. Yelick (J. Parallel Distributed Comput., 2009)

Optimization of sparse matrix-vector multiplication on emerging multicore platforms. - Samuel Williams 001; Leonid Oliker; Richard W. Vuduc; John Shalf; Katherine A. Yelick; James Demmel (Parallel Comput., 2009)

Optimization and Performance Modeling of Stencil Computations on Modern Microprocessors. - Kaushik Datta; Shoaib Kamil 001; Samuel Williams 001; Leonid Oliker; John Shalf; Katherine A. Yelick (SIAM Rev., 2009)

Auto-Tuning Stencil Computations on Multicore and Accelerators. - Kaushik Datta; Samuel Williams 001; Vasily Volkov; Jonathan Carter 002; Leonid Oliker; John Shalf; Katherine A. Yelick (Scientific Computing with Multicore and Accelerators, 2010)

Hybrid PGAS runtime support for multicore nodes. - Filip Blagojevic; Paul Hargrove; Costin Iancu; Katherine A. Yelick (PGAS, 2010)

Exascale opportunities and challenges. - Katherine A. Yelick (HPDC, 2011)

The International Exascale Software Project roadmap. - Jack J. Dongarra; Peter H. Beckman; Terry Moore; Patrick Aerts; Giovanni Aloisio; Jean-Claude Andre; David Barkai; Jean-Yves Berthou; Taisuke Boku; Bertrand Braunschweig; Franck Cappello; Barbara M. Chapman; et al. (Int. J. High Perform. Comput. Appl., 2011)

Yada: Straightforward parallel programming. - David Gay; Joel Galenson; Mayur Naik; Kathy Yelick (Parallel Comput., 2011)

Tuning collective communication for Partitioned Global Address Space programming models. - Rajesh Nishtala; Yili Zheng; Paul Hargrove; Katherine A. Yelick (Parallel Comput., 2011)

Titanium. - Katherine A. Yelick; Susan L. Graham; Paul N. Hilfinger; Dan Bonachea; Jimmy Su; Amir Kamil; Kaushik Datta; Phillip Colella; Tong Wen (Encyclopedia of Parallel Computing, 2011)

Compiling to avoid communication. - Kathy Yelick (PACT, 2012)

Keynote address: Moving a science workload to exascale computing. - Katherine A. Yelick (IISWC, 2012)

Communication avoiding and overlapping for numerical linear algebra. - Evangelos Georganas; Jorge González-Domínguez; Edgar Solomonik; Yili Zheng; Juan Touriño; Katherine A. Yelick (SC, 2012)

A preliminary evaluation of the hardware acceleration of the Cray Gemini interconnect for PGAS languages and comparison with MPI. - Hongzhang Shan; Nicholas J. Wright; John Shalf; Katherine A. Yelick; Marcus Wagner; Nathan Wichmann (SIGMETRICS Perform. Evaluation Rev., 2012)

Optimization of Parallel Particle-to-Grid Interpolation on Leading Multicore Platforms. - Kamesh Madduri; Jimmy Su; Samuel Williams 001; Leonid Oliker; Stéphane Ethier; Katherine A. Yelick (IEEE Trans. Parallel Distributed Syst., 2012)

A Communication-Optimal N-Body Algorithm for Direct Interactions. - Michael B. Driscoll; Evangelos Georganas; Penporn Koanantakool; Edgar Solomonik; Katherine A. Yelick (IPDPS, 2013)

Hierarchical Computation in the SPMD Programming Model. - Amir Kamil; Katherine A. Yelick (LCPC, 2013)

Communication lower bounds and optimal algorithms for programs that reference arrays - Part 1. - Michael Christ; James Demmel; Nicholas Knight; Thomas Scanlon; Katherine A. Yelick (CoRR, 2013)

Best paper awards: 26th international parallel and distributed processing symposium (IPDPS 2012). - Leonid Oliker; Katherine A. Yelick (J. Parallel Distributed Comput., 2013)

On the conditions for efficient interoperability with threads: an experience with PGAS languages using cray communication domains. - Khaled Z. Ibrahim; Katherine A. Yelick (ICS, 2014)

An Evaluation of One-Sided and Two-Sided Communication Paradigms on Relaxed-Ordering Interconnect. - Khaled Z. Ibrahim; Paul Hargrove; Costin Iancu; Katherine A. Yelick (IPDPS, 2014)

UPC++: A PGAS Extension for C++. - Yili Zheng; Amir Kamil; Michael B. Driscoll; Hongzhang Shan; Katherine A. Yelick (IPDPS, 2014)

Evaluation of PGAS Communication Paradigms with Geometric Multigrid. - Hongzhang Shan; Amir Kamil; Samuel Williams 001; Yili Zheng; Katherine A. Yelick (PGAS, 2014)

A Local-View Array Library for Partitioned Global Address Space C++ Programs. - Amir Kamil; Yili Zheng; Katherine A. Yelick (ARRAY@PLDI, 2014)

Parallel De Bruijn Graph Construction and Traversal for De Novo Genome Assembly. - Evangelos Georganas; Aydin Buluç; Jarrod Chapman; Leonid Oliker; Daniel Rokhsar; Katherine A. Yelick (SC, 2014)

A Computation- and Communication-Optimal Parallel Direct 3-Body Algorithm. - Penporn Koanantakool; Katherine A. Yelick (SC, 2014)

The Endgame for Moore's Law: Architecture, Algorithm, and Application Challenges. - Kathy Yelick (FCRC, 2015)

Parallel Hessian Assembly for Seismic Waveform Inversion Using Global Updates. - Scott French; Yili Zheng; Barbara Romanowicz; Katherine A. Yelick (IPDPS, 2015)

merAligner: A Fully Parallel Sequence Aligner. - Evangelos Georganas; Aydin Buluç; Jarrod Chapman; Leonid Oliker; Daniel Rokhsar; Katherine A. Yelick (IPDPS, 2015)

HipMer: an extreme-scale de novo genome assembler. - Evangelos Georganas; Aydin Buluç; Jarrod Chapman; Steven A. Hofmeyr; Chaitanya Aluru; Rob Egan; Leonid Oliker; Daniel Rokhsar; Katherine A. Yelick (SC, 2015)

Communication-Avoiding Parallel Sparse-Dense Matrix-Matrix Multiplication. - Penporn Koanantakool; Ariful Azad; Aydin Buluç; Dmitriy Morozov; Sang-Yun Oh; Leonid Oliker; Katherine A. Yelick (IPDPS, 2016)

A Hartree-Fock Application Using UPC++ and the New DArray Library. - David Ozog; Amir Kamil; Yili Zheng; Paul Hargrove; Jeff R. Hammond; Allen D. Malony; Wibe de Jong; Kathy Yelick (IPDPS, 2016)

21st Century Computer Architecture. - Mark D. Hill; Sarita V. Adve; Luis Ceze; Mary Jane Irwin; David R. Kaeli; Margaret Martonosi; Josep Torrellas; Thomas F. Wenisch; David A. Wood 001; Katherine A. Yelick (CoRR, 2016)

Accelerating Science: A Computing Research Agenda. - Vasant G. Honavar; Mark D. Hill; Katherine A. Yelick (CoRR, 2016)

An Asynchronous Task-based Fan-Both Sparse Cholesky Solver. - Mathias Jacquelin; Yili Zheng; Esmond Ng; Katherine A. Yelick (CoRR, 2016)

Performance Characterization of De Novo Genome Assembly on Leading Parallel Systems. - Marquita Ellis; Evangelos Georganas; Rob Egan; Steven A. Hofmeyr; Aydin Buluç; Brandon Cook 001; Leonid Oliker; Katherine A. Yelick (Euro-Par, 2017)

MerBench: PGAS Benchmarks for High Performance Genome Assembly. - Evangelos Georganas; Marquita Ellis; Rob Egan; Steven A. Hofmeyr; Aydin Buluç; Brandon Cook 001; Leonid Oliker; Katherine A. Yelick (PAW@SC, 2017)

Extreme-Scale De Novo Genome Assembly. - Evangelos Georganas; Steven A. Hofmeyr; Rob Egan; Aydin Buluç; Leonid Oliker; Daniel Rokhsar; Katherine A. Yelick (CoRR, 2017)

Advanced Cyberinfrastructure for Science, Engineering, and Public Policy. - Vasant G. Honavar; Katherine A. Yelick; Klara Nahrstedt; Holly E. Rushmeier; Jennifer Rexford; Mark D. Hill; Elizabeth Bradley; Elizabeth D. Mynatt (CoRR, 2017)

Communication-Avoiding Optimization Methods for Massive-Scale Graphical Model Structure Learning. - Penporn Koanantakool; Alnur Ali; Ariful Azad; Aydin Buluç; Dmitriy Morozov; Sang-Yun Oh; Leonid Oliker; Katherine A. Yelick (CoRR, 2017)

Communication-Avoiding Optimization Methods for Distributed Massive-Scale Sparse Inverse Covariance Estimation. - Penporn Koanantakool; Alnur Ali; Ariful Azad; Aydin Buluç; Dmitriy Morozov; Leonid Oliker; Katherine A. Yelick; Sang-Yun Oh (AISTATS, 2018)

Indigo: A Domain-Specific Language for Fast, Portable Image Reconstruction. - Michael B. Driscoll; Benjamin Brock; Frank Ong; Jonathan I. Tamir; Hsiou-Yuan Liu; Michael Lustig; Armando Fox; Katherine A. Yelick (IPDPS, 2018)

CHIUW 2018 Keynote. - Katherine A. Yelick (IPDPS Workshops, 2018)

Extreme scale de novo metagenome assembly. - Evangelos Georganas; Rob Egan; Steven A. Hofmeyr; Eugene Goltsman; Bill Arndt; Andrew Tritt; Aydin Buluç; Leonid Oliker; Katherine A. Yelick (SC, 2018)

BCL: A Cross-Platform Distributed Container Library. - Benjamin Brock; Aydin Buluç; Katherine A. Yelick (CoRR, 2018)

BCL: A Cross-Platform Distributed Data Structures Library. - Benjamin Brock; Aydin Buluç; Katherine A. Yelick (ICPP, 2019)

diBELLA: Distributed Long Read to Long Read Alignment. - Marquita Ellis; Giulia Guidi; Aydin Buluç; Leonid Oliker; Katherine A. Yelick (ICPP, 2019)

RDMA vs. RPC for Implementing Distributed Data Structures. - Benjamin A. Brock; Yuxin Chen; Jiakun Yan; John D. Owens; Aydin Buluç; Katherine A. Yelick (IA3@SC, 2019)

Computing and Data Challenges in Climate Change. - Katherine A. Yelick (HiPC, 2020)

GPU accelerated partial order multiple sequence alignment for long reads self-correction. - Francesco Peverelli; Lorenzo Di Tucci; Marco D. Santambrogio; Nan Ding 006; Steven A. Hofmeyr; Aydin Buluç; Leonid Oliker; Katherine A. Yelick (IPDPS Workshops, 2020)

LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment. - Alberto Zeni; Giulia Guidi; Marquita Ellis; Nan Ding 006; Marco D. Santambrogio; Steven A. Hofmeyr; Aydin Buluç; Leonid Oliker; Katherine A. Yelick (IPDPS, 2020)

Performance Trade-offs in GPU Communication: A Study of Host and Device-initiated Approaches. - Taylor L. Groves; Ben Brock; Yuxin Chen; Khaled Z. Ibrahim; Lenny Oliker; Nicholas J. Wright; Samuel Williams 001; Katherine A. Yelick (PMBS@SC, 2020)

Reducing communication in graph neural network training. - Alok Tripathy; Katherine A. Yelick; Aydin Buluç (SC, 2020)

ADEPT: a domain independent sequence alignment strategy for gpu architectures. - Muaaz G. Awan; Jack Deslippe; Aydin Buluç; Oguz Selvitopi; Steven A. Hofmeyr; Leonid Oliker; Katherine A. Yelick (BMC Bioinform., 2020)

The Parallelism Motifs of Genomic Data Analysis. - Katherine A. Yelick; Aydin Buluç; Muaaz G. Awan; Ariful Azad; Benjamin Brock; Rob Egan; Saliya Ekanayake; Marquita Ellis; Evangelos Georganas; Giulia Guidi; Steven A. Hofmeyr; Oguz Selvitopi; et al. (CoRR, 2020)

Opportunities and Challenges for Next Generation Computing. - Gregory D. Hager; Mark D. Hill; Katherine A. Yelick (CoRR, 2020)

PersGNN: Applying Topological Data Analysis and Geometric Deep Learning to Structure-Based Protein Function Prediction. - Nicolas Swenson; Aditi S. Krishnapriyan; Aydin Buluç; Dmitriy Morozov; Katherine A. Yelick (CoRR, 2020)

The Road for Recovery: Aligning COVID-19 efforts and building a more resilient future. - Meredith M. Lee; Alicia D. Johnson; Katherine A. Yelick; Jennifer T. Chayes (IEEE Data Eng. Bull., 2020)

BELLA: Berkeley Efficient Long-Read to Long-Read Aligner and Overlapper. - Giulia Guidi; Marquita Ellis; Daniel Rokhsar; Katherine A. Yelick; Aydin Buluç (ACDA, 2021)

Scaling Generalized N-Body Problems, A Case Study from Genomics. - Marquita Ellis; Aydin Buluç; Katherine A. Yelick (ICPP, 2021)

Distributed-memory parallel algorithms for sparse times tall-skinny-dense matrix multiplication. - Oguz Selvitopi; Benjamin Brock; Israt Nisa; Alok Tripathy; Katherine A. Yelick; Aydin Buluç (ICS, 2021)

Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly. - Giulia Guidi; Oguz Selvitopi; Marquita Ellis; Leonid Oliker; Katherine A. Yelick; Aydin Buluç (IPDPS, 2021)

Distributed-Memory k-mer Counting on GPUs. - Israt Nisa; Prashant Pandey 001; Marquita Ellis; Leonid Oliker; Aydin Buluç; Katherine A. Yelick (IPDPS, 2021)

Asynchrony versus bulk-synchrony for a generalized N-body problem from genomics. - Marquita Ellis; Aydin Buluç; Katherine A. Yelick (PPoPP, 2021)

QFAST: Conflating Search and Numerical Optimization for Scalable Quantum Circuit Synthesis. - Ed Younis; Koushik Sen; Katherine A. Yelick; Costin Iancu (QCE, 2021)

Accelerating large scale de novo metagenome assembly using GPUs. - Muaaz Gul Awan; Steven A. Hofmeyr; Rob Egan; Nan Ding 006; Aydin Buluç; Jack Deslippe; Leonid Oliker; Katherine A. Yelick (SC, 2021)

SPAA'21 Panel Paper: Architecture-Friendly Algorithms versus Algorithm-Friendly Architectures. - Guy E. Blelloch; William J. Dally; Margaret Martonosi; Uzi Vishkin; Katherine A. Yelick (SPAA, 2021)

10 Years Later: Cloud Computing is Closing the Performance Gap. - Giulia Guidi; Marquita Ellis; Aydin Buluç; Katherine A. Yelick; David E. Culler (ICPE (Companion), 2021)

CloudBank: Managed Services to Simplify Cloud Access for Computer Science Research and Education. - Michael L. Norman; Vince Kellen; Shava Smallen; Brian DeMeulle; Shawn Strande; Ed Lazowska; Naomi Alterman; Rob Fatland; Sarah Stone; Amanda Tan; Katherine A. Yelick; Eric Van Dusen; et al. (PEARC, 2021)

Atos: A Task-Parallel GPU Dynamic Scheduling Framework for Dynamic Irregular Computations. - Yuxin Chen; Benjamin Brock; Serban D. Porumbescu; Aydin Buluç; Katherine A. Yelick; John D. Owens (CoRR, 2021)

Atos: A Task-Parallel GPU Scheduler for Graph Analytics. - Yuxin Chen; Benjamin Brock; Serban D. Porumbescu; Aydin Buluç; Katherine A. Yelick; John D. Owens (ICPP, 2022)

Distributed-Memory Parallel Contig Generation for De Novo Long-Read Genome Assembly. - Giulia Guidi; Gabriel Raulet; Daniel Rokhsar; Leonid Oliker; Katherine A. Yelick; Aydin Buluç (ICPP, 2022)

Scalable Irregular Parallelism with GPUs: Getting CPUs Out of the Way. - Yuxin Chen; Benjamin Brock; Serban D. Porumbescu; Aydin Buluç; Katherine A. Yelick; John D. Owens (SC, 2022)

Extreme-Scale Many-against-Many Protein Similarity Search. - Oguz Selvitopi; Saliya Ekanayake; Giulia Guidi; Muaaz G. Awan; Georgios A. Pavlopoulos; Ariful Azad; Nikos Kyrpides; Leonid Oliker; Katherine A. Yelick; Aydin Buluç (SC, 2022)

Singleton Sieving: Overcoming the Memory/Speed Trade-Off in Exascale κ-mer Analysis. - Hunter McCoy; Steven A. Hofmeyr; Katherine A. Yelick; Prashant Pandey 001 (ACDA, 2023)

Designing Efficient SIMD Kernels for High Performance Sequence Alignment. - Doru-Thom Popovici; Muaaz Gul Awan; Giulia Guidi; Rob Egan; Steven A. Hofmeyr; Leonid Oliker; Katherine A. Yelick (IPDPS Workshops, 2023)

High-Performance Filters for GPUs. - Hunter McCoy; Steven A. Hofmeyr; Katherine A. Yelick; Prashant Pandey 001 (PPoPP, 2023)

Sparsity-Aware Communication for Distributed Graph Neural Network Training. - Ujjaini Mukhopadhyay; Alok Tripathy; Oguz Selvitopi; Katherine A. Yelick; Aydin Buluç (ICPP, 2024)

RDMA-Based Algorithms for Sparse Matrix Multiplication on GPUs. - Benjamin Brock; Aydin Buluç; Katherine A. Yelick (ICS, 2024)

Distributed Matrix-Based Sampling for Graph Neural Network Training. - Alok Tripathy; Katherine A. Yelick; Aydin Buluç (MLSys, 2024)

Accelerating Multi-GPU Embedding Retrieval with PGAS-Style Communication for Deep Learning Recommendation Systems. - Yuxin Chen; Aydin Buluç; Katherine A. Yelick; John D. Owens (SC Workshops, 2024)

Exabiome: Advancing Microbial Science through Exascale Computing. - Steven A. Hofmeyr; Aydin Buluç; Robert Riley 002; Rob Egan; Oguz Selvitopi; Leonid Oliker; Katherine A. Yelick; Migun Shakya; Brett Youtsey; Ariful Azad (Comput. Sci. Eng., 2024)

On Multilinear Inequalities of Holder-Brascamp-Lieb Type for Torsion-Free Discrete Abelian Groups. - Michael Christ; James Demmel; Nicholas Knight; Thomas Scanlon; Katherine A. Yelick (J. Log. Anal., 2024)

Scaling Graph Neural Networks for Particle Track Reconstruction. - Alok Tripathy; Alina Lazar; Xiangyang Ju; Paolo Calafiura; Katherine A. Yelick; Aydin Buluç (IPDPS (Workshops), 2025)