A Structure-Based Search Engine for Phylogenetic Databases. - Huiyuan Shan; Katherine G. Herbert; William H. Piel; Dennis E. Shasha; Jason Tsong-Li Wang (SSDBM, 2002)

XML Query by Example. - Sen Zhang 007; Jason Tsong-Li Wang; Katherine G. Herbert (Int. J. Comput. Intell. Appl., 2002)

XML Clustering by Principal Component Analysis. - Jianghui Liu; Jason T. L. Wang; Wynne Hsu; Katherine G. Herbert (ICTAI, 2004)

BIO-AJAX: An Extensible Framework for Biological Data Cleaning. - Katherine G. Herbert; Narain H. Gehani; William H. Piel; Jason Tsong-Li Wang; Cathy H. Wu (SIGMOD Rec., 2004)

Integrating Interdisciplinary Science into High School Science Modules Through a Preproinsulin Example. - Katherine G. Herbert; James H. Dyer (BioMath in the Schools, 2005)

Lineage Path Integration for Phylogenetic Resources. - Katherine G. Herbert; Shashikanth Pusapati; Jason Tsong-Li Wang; William H. Piel (SSDBM, 2005)

A New Kernel Method for RNA Classification. - Xiaoming Wu; Jason Tsong-Li Wang; Katherine G. Herbert (BIBE, 2006)

Automated gene processing and exon sequence retrieval. - Tazeen Fatima; Jonathan D. Marra; Ronald Realubit; Georgiy Schegolev; Katherine G. Herbert (ITiCSE, 2006)

An interdisciplinary undergraduate science informatics degree in a liberal arts context. - Dorothy Deremer; Katherine G. Herbert (SIGCSE, 2006)

PhyloMiner: A Tool for Evolutionary Data Analysis. - Sen Zhang 007; Katherine G. Herbert; Jason T. L. Wang; William H. Piel; David R. B. Stockwell (SSDBM, 2006)

Toward an Integrated RNA Motif Database. - Jason Tsong-Li Wang; Dongrong Wen; Bruce A. Shapiro; Katherine G. Herbert; Jing Li; Kaushik Ghosh (DILS, 2007)

Prediction of modulators of pyruvate kinase in smiles text using aprori methods. - Jason S. Caronna; Rojita Sharma; Jonathan D. Marra; Virginia L. Iuorno; Katherine G. Herbert; Jeffrey H. Toney (ITiCSE, 2007)

A study of phylogenetic tools for genomic nomenclature data cleaning. - Jonathan D. Marra; Katherine G. Herbert; Jason T. L. Wang (ITiCSE, 2007)

Biological data cleaning: a case study. - Katherine G. Herbert; Jason T. L. Wang (Int. J. Inf. Qual., 2007)

Algorithms and Software for Calculating and Visualizing the Cardinality of the Grand Bounding Ball by Means of Intersection Trees. - Robert Barton; Sen Zhang 007; Katherine G. Herbert (DMIN, 2008)

Bioinformatic Databases. - Katherine G. Herbert; Junilda Spirollari; Jason Tsong-Li Wang; William H. Piel; John D. Westbrook; Winona C. Barker; Zhang-Zhi Hu; Cathy H. Wu (Wiley Encyclopedia of Computer Science and Engineering, 2008)

Mobile interaction and query optimization in a protein-ligand data analysis system. - Marvin Lapeine; Katherine G. Herbert; Emily Hill 001; Nina M. Goodey (SIGMOD Conference, 2013)

Scientific Data Infrastructure for Sustainability Science Mobile Applications. - Katherine G. Herbert; Emily Hill 001; Jerry Alan Fails; Joseph O. Ajala; Richard T. Boniface; Paul W. Cushman (BigData Congress, 2014)

GeoTagger: a collaborative and participatory environmental inquiry system. - Jerry Alan Fails; Katherine G. Herbert; Emily Hill 001; Christopher Loeschorn; Spencer Kordecki; David Dymko; Andrew DeStefano; Zill Christian (CSCW Companion, 2014)

Current Developments in Big Data and Sustainability Sciences in Mobile Citizen Science Applications. - Nikita S. Panchariya; Andrew DeStefano; Varsha Nimbagal; Revathi Ragupathy; Serkan Yavuz; Katherine G. Herbert; Emily Hill 001; Jerry Alan Fails (BigDataService, 2015)

Geotagger: A collaborative environmental inquiry platform. - Jerry Alan Fails; Katherine G. Herbert; Emily Hill 001; Andrew De Stefano; Brandon Hesse; Paul W. Cushman; Travis Gant; Syed Shah; Aliet Abreu-Cruz; Nikita S. Panchariya; Varsha Nimbagal (CTS, 2015)

Bioinformatics Database Systems. - Kevin Byron; Katherine G. Herbert; Jason T. L. Wang (CRC Press, 2016)

Infusing CS Graduate Transition Curriculum with Professional, Technical and Data Science Competencies. - Katherine G. Herbert-Berger; Nina M. Goodey; Stephen Ruczszyk; Scott Kight; Thomas J. Marlowe (SIGCSE, 2019)

What Can the Reid List of First Programming Languages Teach Us About Teaching CS1? - Robert M. Siegfried; Diane Liporace; Katherine G. Herbert-Berger (SIGCSE, 2019)

CS2 and the Impact of Programming Language Choice. - Robert M. Siegfried; Katherine G. Herbert-Berger; Jason P. Siegfried (SIGCSE, 2020)

Machine Learning in Heliophysics and Space Weather Forecasting: A White Paper of Findings and Recommendations. - Gelu Nita; Manolis K. Georgoulis; Irina Kitiashvili; Viacheslav Sadykov; Enrico Camporeale; Alexander Kosovichev; Haimin Wang; Vincent Oria; Jason T. L. Wang; Rafal A. Angryk; Berkay Aydin; Azim Ahmadzadeh; et al. (CoRR, 2020)

Trends Of Commonly Used Programming Languages in CS1 And CS2 Learning. - Robert M. Siegfried; Katherine G. Herbert-Berger; Kees Leune; Jason P. Siegfried (ICCSE, 2021)

Drawing a Computer Scientst: Assessing the Images of the Computer Scientist Among K-8 Teachers. - Minsun Shin; Sumi Hagiwara; Katherine G. Herbert-Berger; Vaibhav K. Anu; Rebecca A. Goldstein; Kazi Zakia Sultana (FIE, 2023)

Professional and Capacity Building in K-12 Computer Science Education: A Multi-Faceted Approach. - Katherine G. Herbert; Vaibhav K. Anu; Kazi Zakia Sultana; Stefan A. Robila; Jesse Ryan Miller; Sumi Hagiwara; Rebecca A. Goldstein; Thomas J. Marlowe (SIGCSE (2), 2023)

Interpretable Deep Learning for Solar Flare Prediction. - Vinay Ram Gazula; Katherine G. Herbert; Yasser Abduallah; Jason T. L. Wang (ICTAI, 2024)

Solar Weather, Simulation, and AI in Middle School: Developing a Case Study. - Esther Douglass; Katherine G. Herbert; Vaibhav K. Anu; Thomas J. Marlowe; Sumi Hagiwara (SIGCSE (2), 2024)

Explainable Artificial Intelligence in Deep Learning-Based Solar Storm Predictions. - Adam Rawashdeh; Jason T. L. Wang; Katherine G. Herbert (FLAIRS, 2025)

Preparing K-8 Teachers to Teach and Infuse Computer Science Across All Subjects. - Angela S. Williams-Nash; Sumi Hagiwara; Katherine G. Herbert; Thomas J. Marlowe; Rebecca A. Goldstein; Vaibhav K. Anu (SIGCSE (1), 2025)