Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series. - Oliver Stegle; Katherine J. Denby; David L. Wild; Stuart McHattie; Andrew Meade; Zoubin Ghahramani; Karsten M. Borgwardt (GCB, 2009)

A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. - Oliver Stegle; Katherine J. Denby; David L. Wild; Zoubin Ghahramani; Karsten M. Borgwardt (RECOMB, 2009)

R/BHC: fast Bayesian hierarchical clustering for microarray data. - Richard S. Savage; Katherine A. Heller; Yang Xu 023; Zoubin Ghahramani; William M. Truman; Murray Grant; Katherine J. Denby; David L. Wild (BMC Bioinform., 2009)

Granger causality vs. dynamic Bayesian network inference: a comparative study. - Cunlu Zou; Katherine J. Denby; Jianfeng Feng (BMC Bioinform., 2009)

Temporal clustering by affinity propagation reveals transcriptional modules in Arabidopsis thaliana. - Steven J. Kiddle; Oliver P. F. Windram; Stuart McHattie; Andrew Meade; Jim Beynon; Vicky Buchanan-Wollaston; Katherine J. Denby; Sach Mukherjee (Bioinform., 2010)

On reverse engineering of gene interaction networks using time course data with repeated measurements. - Edward R. Morrissey; Miguel A. Juárez; Katherine J. Denby; Nigel J. Burroughs (Bioinform., 2010)

A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. - Oliver Stegle; Katherine J. Denby; Emma J. Cooke; David L. Wild; Zoubin Ghahramani; Karsten M. Borgwardt (J. Comput. Biol., 2010)

Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks. - Christopher A. Penfold; Vicky Buchanan-Wollaston; Katherine J. Denby; David L. Wild (Bioinform., 2012)

Wigwams: identifying gene modules co-regulated across multiple biological conditions. - Krzysztof Polanski; Johanna Rhodes; Claire Hill; Peijun Zhang; Dafyd J. Jenkins; Steven J. Kiddle; Aleksey Jironkin; Jim Beynon; Vicky Buchanan-Wollaston; Sascha Ott; Katherine J. Denby (Bioinform., 2014)

Bringing numerous methods for expression and promoter analysis to a public cloud computing service. - Krzysztof Polanski; Bo Gao 001; Sam A. Mason; Paul Brown; Sascha Ott; Katherine J. Denby; David L. Wild (Bioinform., 2018)

AgriFoodPy: a package for modelling food systems. - Juan Cordero; Kevin Donkers; Ian Harrison; Sarah Bridle; Angelina Frankowska; Michelle Cain; Neil Ward; Jez Frendenburgh; Edward Pope; Alana Kluczkovski; Ximena Schmidt; Jacqueline Silva; et al. (J. Open Source Softw., 2024)