A hybrid multi-loop genetic-algorithm/simplex/spatial-grid method for locating the optimum orientation of an adsorbed protein on a solid surface. - Tao Wei; Shengjing Mu; Aiichiro Nakano; Katherine Shing (Comput. Phys. Commun., 2009)

sDMD: An open source program for discontinuous molecular dynamics simulation of protein folding and aggregation. - Size Zheng 002; Leili Javidpour; Muhammad Sahimi; Katherine Shing; Aiichiro Nakano (Comput. Phys. Commun., 2020)