Gustaf: Detecting and correctly classifying SVs in the NGS twilight zone. - Kathrin Trappe; Anne-Katrin Emde; Hans-Christian Ehrlich; Knut Reinert (Bioinform., 2014)

Genome alignment with graph data structures: a comparison. - Birte Kehr; Kathrin Trappe; Manuel Holtgrewe; Knut Reinert (BMC Bioinform., 2014)

Detecting horizontal gene transfer by mapping sequencing reads across species boundaries. - Kathrin Trappe; Tobias Marschall; Bernhard Y. Renard (Bioinform., 2016)

Computational Methods for Integrative Structural Variant Analysis Across Species Boundaries - Kathrin Trappe (2018)

Where did you come from, where did you go: Refining metagenomic analysis tools for horizontal gene transfer characterisation. - Enrico Seiler; Kathrin Trappe; Bernhard Y. Renard (PLoS Comput. Biol., 2019)