A parallel architecture for regulatory motif algorithm assessment. - Daniel Quest; Kathryn Dempsey; Mohammad Shafiullah; Dhundy Bastola; Hesham H. Ali (IPDPS, 2008)

MTAP: The Motif Tool Assessment Platform. - Daniel Quest; Kathryn Dempsey; Mohammad Shafiullah; Dhundy Bastola; Hesham H. Ali (BMC Bioinform., 2008)

An intelligent data-centric approach toward identification of conserved motifs in protein sequences. - Kathryn Dempsey; Benjamin Currall; Richard Hallworth; Hesham H. Ali (BCB, 2010)

A New Approach for Sequence Analysis: Illustrating an Expanded Bioinformatics View through Exploring Properties of the Prestin Protein. - Kathryn Dempsey; Benjamin Currall; Richard Hallworth; Hesham H. Ali (Handbook of Research on Computational and Systems Biology, 2011)

Evaluation of essential genes in correlation networks using measures of centrality. - Kathryn Dempsey; Hesham H. Ali (BIBM Workshops, 2011)

Identifying modular function via edge annotation in gene correlation networks using Gene Ontology search. - Kathryn Dempsey; Ishwor Thapa; Dhundy Bastola; Hesham H. Ali (BIBM Workshops, 2011)

A Novel Correlation Networks Approach for the Identification of Gene Targets. - Kathryn Dempsey; Stephen Bonasera; Dhundy Bastola; Hesham H. Ali (HICSS, 2011)

A noise reducing sampling approach for uncovering critical properties in large scale biological networks. - Kanimathi Duraisamy; Kathryn Dempsey; Hesham H. Ali; Sanjukta Bhowmick (HPCS, 2011)

A Parallel Graph Sampling Algorithm for Analyzing Gene Correlation Networks. - Kathryn Dempsey; Kanimathi Duraisamy; Hesham H. Ali; Sanjukta Bhowmick (ICCS, 2011)

On the design of advanced filters for biological networks using graph theoretic properties. - Kathryn Dempsey; Tzu-Yi Chen; Sanjukta Bhowmick; Hesham H. Ali (BIBM, 2012)

A Novel Multithreaded Algorithm for Extracting Maximal Chordal Subgraphs. - Mahantesh Halappanavar; John Feo; Kathryn Dempsey; Hesham H. Ali; Sanjukta Bhowmick (ICPP, 2012)

The Development of Parallel Adaptive Sampling Algorithms for Analyzing Biological Networks. - Kathryn Dempsey; Kanimathi Duraisamy; Sanjukta Bhowmick; Hesham H. Ali (IPDPS Workshops, 2012)

Functional identification in correlation networks using gene ontology edge annotation. - Kathryn Dempsey; Ishwor Thapa; Dhundy Bastola; Hesham H. Ali (Int. J. Comput. Biol. Drug Des., 2012)

Function-preserving Filters for Sampling in Biological Networks. - Kathryn Dempsey; Sanjukta Bhowmick; Hesham H. Ali (ICCS, 2012)

Identifying Pathway Proteins in Networks using Convergence. - Kathryn Dempsey; Hesham H. Ali (BCB, 2013)

On Mining Biological Signals Using Correlation Networks. - Kathryn Dempsey; Ishwor Thapa; Claudia Cortes; Zach Eriksen; Dhundy Bastola; Hesham H. Ali (ICDM Workshops, 2013)

On Identifying and Analyzing Significant Nodes in Protein-Protein Interaction Networks. - Rohan Khazanchi; Kathryn Dempsey; Ishwor Thapa; Hesham H. Ali (ICDM Workshops, 2013)

Analysis of Incrementally Generated Clusters in Biological Networks Using Graph-Theoretic Filters and Ontology Enrichment. - Sean West; Kathryn Dempsey; Sanjukta Bhowmick; Hesham H. Ali (ICDM Workshops, 2013)

A structure-preserving hybrid-chordal filter for sampling in correlation networks. - Kathryn Dempsey; Tzu-Yi Chen; Sriram Srinivasan 001; Sanjukta Bhowmick; Hesham H. Ali (HPCS, 2013)

A Parallel Template for Implementing filters for biological Correlation Networks. - Kathryn Dempsey; Vladimir Ufimtsev; Sanjukta Bhowmick; Hesham Ali 001 (Int. J. Comput., 2013)

On the Robustness of the Biological Correlation Network Model. - Kathryn Dempsey; Hesham H. Ali (BIOINFORMATICS, 2014)

Introduction to Data Analysis and Visualization in Biomedical Informatics Minitrack. - Hesham H. Ali; Kathryn Dempsey (HICSS, 2014)

Recognizing Patient Safety Importance through Instrument Validation on Physicians' Assessment of an EHR. - Cherie Noteboom; Kathryn Dempsey; Ann L. Fruhling (HICSS, 2014)

Identifying aging-related genes in mouse hippocampus using gateway nodes. - Kathryn Dempsey; Hesham H. Ali (BMC Syst. Biol., 2014)

Identification of Biologically Significant Elements Using Correlation Networks in High Performance Computing Environments. - Kathryn Dempsey Cooper; Sachin Pawaskar; Hesham H. Ali (IWBBIO (2), 2015)