On the comparison of state- and transition-based analysis of biological relevance in gene co-expression networks. - Kathryn M. Cooper; Prasuna Vemuri; Hesham H. Ali (BIBM, 2015)

Identifying Aging Genes in the Aging Mouse Hypothalamus Using Gateway Node Analysis of Correlation Networks. - Kathryn M. Cooper; Stephen Bonasera; Hesham H. Ali (BIOINFORMATICS, 2015)

Evaluating the Robustness of Correlation Network Analysis in the Aging Mouse Hypothalamus. - Kathryn M. Cooper; Stephen Bonasera; Hesham H. Ali (BIOSTEC (Selected Papers), 2015)

Forecasting the Spread of Mosquito-Borne Disease using Publicly Accessible Data: A Case Study in Chikungunya. - Kathryn M. Cooper; Dhundy Bastola; Robin A. Gandhi; Dario Ghersi; Steven H. Hinrichs; Marsha Morien; Ann L. Fruhling (AMIA, 2016)

A compartmental network model for the spread of whooping cough. - Hakimeh Ameri; Kathryn M. Cooper (BIBM, 2017)

A network-based approach to mine temporal genes exhibiting significant expression variation in Caenorhabditis elegans. - Kathryn M. Cooper; Wail Hassan; Hesham Ali 001 (BIBM, 2017)

Correlation networks: Biologically driven relationships from gene expression data. - Grogan W. Huff; Kathryn M. Cooper (BIBM, 2017)

Analysis of structural measurements in correlation networks built from gene expression data across different tissue types in Mus musculus. - Qianran Li; Kathryn M. Cooper (BIBM, 2017)

Network Analysis of Antibiotic Resistance Identifies Compelling Mutations across Pathways. - Kimia Ameri; Kathryn M. Cooper (BIBM, 2019)

Identifying Structural Changes in Correlation Networks Models of Cancer Gene Expression by Stage. - Qianran Li; Dario Ghersi; Ishwor Thapa; Ling Zhang; Hesham Ali 001; Kate Cooper 001 (BIBM, 2019)

Identification of temporal network changes in short-course gene expression from C. elegans reveals structural volatility. - Kathryn M. Cooper; Wail Hassan; Hesham Ali 001 (Int. J. Comput. Biol. Drug Des., 2019)

Characterization of S. cerevisiae Protein Complexes by Representative DDI Graph Planarity. - William Gasper; Kathryn M. Cooper; Nathan Cornelius; Hesham Ali 001; Sanjukta Bhowmick (BCB, 2020)

On the Planarity of Validated Complexes of Model Organisms in Protein-Protein Interaction Networks. - Kathryn M. Cooper; Nathan Cornelius; William Gasper; Sanjukta Bhowmick; Hesham Ali 001 (ICCS (1), 2020)

Measurement of structural change in co-expression networks from cancer gene expression data. - Qianran Li; Dario Ghersi; Ishwor Thapa; Ling Zhang; Hesham Ali 001; Kate Cooper 001 (Int. J. Data Min. Bioinform., 2020)

Parallel Planar Approximation for Large Networks. - William Gasper; Kathryn M. Cooper; Nathan Cornelius; Hesham Ali 001 (BIBM, 2021)

Measures of Reading Ease and NOVA Food Processing Classification on Ingredients Lists in the United States. - Kate Cooper 001; Alivia Ankrum; Martina A. Clarke; Julie Blaskewicz Boron; Jana Ponce; Erin Bass (ICHI, 2024)