Inference for Nonlinear Epidemiological Models Using Genealogies and Time Series. - David A. Rasmussen; Oliver Ratmann; Katia Koelle (PLoS Comput. Biol., 2011)

Phylodynamic Inference and Model Assessment with Approximate Bayesian Computation: Influenza as a Case Study. - Oliver Ratmann; Gé Donker; Adam Meijer; Christophe Fraser; Katia Koelle (PLoS Comput. Biol., 2012)

Viral Phylodynamics. - Erik M. Volz; Katia Koelle; Trevor Bedford (PLoS Comput. Biol., 2013)

Phylodynamic Inference for Structured Epidemiological Models. - David A. Rasmussen; Erik M. Volz; Katia Koelle (PLoS Comput. Biol., 2014)

Drivers of Inter-individual Variation in Dengue Viral Load Dynamics. - Rotem Ben-Shachar; Scott C. Schmidler; Katia Koelle (PLoS Comput. Biol., 2016)