Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts. - Robert Küffner; Katrin Fundel; Ralf Zimmer (ECCB/JBI, 2005)

Web servicing the biological office. - Martin Szugat; Daniel Güttler; Katrin Fundel; Florian Sohler; Ralf Zimmer (ECCB/JBI, 2005)

Data Processing Effects on the Interpretation of Microarray Gene Expression Experiments. - Katrin Fundel; Robert Küffner; Thomas Aigner; Ralf Zimmer (German Conference on Bioinformatics, 2005)

A simple approach for protein name identification: prospects and limits. - Katrin Fundel; Daniel Güttler; Ralf Zimmer; Joannis Apostolakis (BMC Bioinform., 2005)

ProMiner: rule-based protein and gene entity recognition. - Daniel Hanisch; Katrin Fundel; Heinz-Theodor Mevissen; Ralf Zimmer; Juliane Fluck (BMC Bioinform., 2005)

Characterization of Protein Interactions. - Robert Küffner; Timo Duchrow; Katrin Fundel; Ralf Zimmer (German Conference on Bioinformatics, 2006)

Reliable gene signatures for microarray classification: assessment of stability and performance. - Chad A. Davis; Fabian Gerick; Volker Hintermair; Caroline C. Friedel; Katrin Fundel; Robert Küffner; Ralf Zimmer (Bioinform., 2006)

Gene and protein nomenclature in public databases. - Katrin Fundel; Ralf Zimmer (BMC Bioinform., 2006)

RelEx - Relation extraction using dependency parse trees. - Katrin Fundel; Robert Küffner; Ralf Zimmer (Bioinform., 2007)