Strictly digital neurocomputer based on a paradigm of constraint set programming for solving combinatorial optimization problems. - Tohru Nakagawa; Katsuhiko Murakami; Hajime Kitagawa (ICNN, 1993)

Solving the bipartite subgraph problems using strictly digital neural networks with virtual slack-neurons. - Katsuhiko Murakami; Tohru Nakagawa; Hajime Kitagawa (ICNN, 1995)

Gene recognition by combination of several gene-finding programs. - Katsuhiko Murakami; Toshihisa Takagi (Bioinform., 1998)

Solving a graph layout problem using strictly digital neural networks with virtual slack-neurons. - Katsuhiko Murakami; Tohru Nakagawa (IJCNN, 1999)

Clustering and Detection of 5' Splice Sites of mRNA by k Weight-Matrices Model. - Katsuhiko Murakami; Toshihisa Takagi (Pacific Symposium on Biocomputing, 1999)

Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees. - Akihiro Matsuya; Ryuichi Sakate; Yoshihiro Kawahara; Kanako O. Koyanagi; Yoshiharu Sato; Yasuyuki Fujii; Chisato Yamasaki; Takuya Habara; Hajime Nakaoka; Fusano Todokoro; Kaori Yamaguchi; Toshinori Endo; et al. (Nucleic Acids Res., 2008)

G-compass: a web-based comparative genome browser between human and other vertebrate genomes. - Yoshihiro Kawahara; Ryuichi Sakate; Akihiro Matsuya; Katsuhiko Murakami; Yoshiharu Sato; Hao Zhang; Takashi Gojobori; Takeshi Itoh; Tadashi Imanishi (Bioinform., 2009)

H-InvDB in 2009: extended database and data mining resources for human genes and transcripts. - Chisato Yamasaki; Katsuhiko Murakami; Jun-ichi Takeda; Yoshiharu Sato; Akiko Ogura Noda; Ryuichi Sakate; Takuya Habara; Hajime Nakaoka; Fusano Todokoro; Akihiro Matsuya; Tadashi Imanishi; Takashi Gojobori (Nucleic Acids Res., 2010)

PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from H-Invitational protein-protein interactions integrative dataset. - Shingo Kikugawa; Kensaku Nishikata; Katsuhiko Murakami; Yoshiharu Sato; Mami Suzuki; Md. Altaf-Ul-Amin; Shigehiko Kanaya; Tadashi Imanishi (BMC Syst. Biol., 2012)

H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery. - Jun-ichi Takeda; Chisato Yamasaki; Katsuhiko Murakami; Yoko Nagai; Miho Sera; Yuichiro Hara; Nobuo Obi; Takuya Habara; Takashi Gojobori; Tadashi Imanishi (Nucleic Acids Res., 2013)

Extraction of latent concepts from an integrated human gene database: Non-negative matrix factorization for identification of hidden data structure. - Katsuhiko Murakami (SoCPaR, 2015)

A New Way of Visualizing Curricula Using Competencies: Cosine Similarity, Multidimensional Scaling Methods, and Scatter Plotting. - Kunihiko Takamatsu; Katsuhiko Murakami; Takafumi Kirimura; Kenya Bannaka; Ikuhiro Noda; Mayumi Yamasaki; Raphael-Joel Wei Lim; Kenichiro Mitsunari; Tadashi Nakamura; Yasuo Nakata (IIAI-AAI, 2017)

Predicting the Probability of Student Dropout through EMIR Using Data from Current and Graduate Students. - Katsuhiko Murakami; Kunihiko Takamatsu; Yasuhiro Kozaki; Aoi Kishida; Kenya Bannaka; Ikuhiro Noda; Asahi Jyunichiro; Kazuyoshi Takao; Kenichiro Mitsunari; Tadashi Nakamura; Yasuo Nakata (IIAI-AAI, 2018)

Generic Support System Prototype in Eduinformatics for Students Selecting a Seminar. - Mayasuki Seki; Yasuo Nakata; Yasuhiro Kozaki; Katsuhiko Murakami; Eriko Matsumoto; Kenya Bannaka; Ikuhiro Noda; Kenichiro Mitsunari; Kunihiko Takamatsu (IIAI-AAI, 2018)

A New Way of Visualizing Curricula Using Competencies: Cosine Similarity and t-SNE. - Kunihiko Takamatsu; Katsuhiko Murakami; Yasuhiro Kozaki; Kenya Bannaka; Ikuhiro Noda; Raphael-Joel Wei Lim; Kenichiro Mitsunari; Tadashi Nakamura; Yasuo Nakata (IIAI-AAI, 2018)

New Proposal to Compare Student Data in Institutional Research. - Yasuo Nakata; Katsuhiko Murakami; Yasuhiro Kozaki; Takafumi Kirimura; Aoi Sugiura; Kenya Bannaka; Kunihiko Takamatsu (IIAI-AAI, 2019)

Predicting the Probability of Student's Academic Abilities and Progress with EMIR and Data from Current and Graduated Students. - Kunihiko Takamatsu; Katsuhiko Murakami; Tsugumi Oshiro; Aoi Sugiura; Kenya Bannaka; Yasuo Nakata (IIAI-AAI, 2019)

Report on the First Knowledge Graph Reasoning Challenge 2018. - Takahiro Kawamura; Shusaku Egami; Koutarou Tamura; Yasunori Hokazono; Takanori Ugai; Yusuke Koyanagi; Fumihito Nishino; Seiji Okajima; Katsuhiko Murakami; Kunihiko Takamatsu; Aoi Sugiura; Shun Shiramatsu; et al. (JIST, 2019)

Report on the First Knowledge Graph Reasoning Challenge 2018 - Toward the eXplainable AI System. - Takahiro Kawamura; Shusaku Egami; Koutarou Tamura; Yasunori Hokazono; Takanori Ugai; Yusuke Koyanagi; Fumihito Nishino; Seiji Okajima; Katsuhiko Murakami; Kunihiko Takamatsu; Aoi Sugiura; Shun Shiramatsu; et al. (CoRR, 2019)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. - Toshiaki Katayama; Shuichi Kawashima; Gos Micklem; Shin Kawano; Jin-Dong Kim; Simon Kocbek; Shinobu Okamoto; Yue Wang 040; Hongyan Wu; Atsuko Yamaguchi; Yasunori Yamamoto; Erick Antezana; et al. (F1000Research, 2019)

Evaluation of a First-Year Course Using Factor Analysis. - Yasuo Nakata; Kenya Bannaka; Katsuhiko Murakami; Yasuhiro Kozaki; Kenichiro Mitsunari; Kunihiko Takamatsu (IIAI-AAI, 2020)

Introducing new criteria for IR, using student data compared analysis based on Eduinformatics. - Kunihiko Takamatsu; Katsuhiko Murakami; Yasuhiro Kozaki; Aoi Kishida; Takafumi Kirimura; Kenya Bannaka; Kenichiro Mitsunari; Masato Omori; Yasuo Nakata (IIAI-AAI, 2020)

Biomarker discovery using contaminated mixed tumor samples. - Katsuhiko Murakami (IIAI-AAI-Winter, 2022)

Fully Automated System for the Marking and Quantitative Assessment of Reading Skills of Students Based on Abridgement. - Koichi Akashi; Hibiki Ito; Kunihiko Takamatsu; Shotaro Imai; Sayaka Matsumoto; Katsuhiko Murakami; Tetsuhiro Gozu (IIAI-AAI-Winter, 2023)

Deciphering the code of the novel "The Dancing Men". - Katsuhiko Murakami; Aoi Kishida; Hibiki Ito; Sayaka Matsumoto; Kunihiko Takamatsu (ICSC, 2023)