Fuzzy Modeling in Medical Diagnosis: A Case Study for Cardiovascular Diseases. - Kavishwar B. Wagholikar; Shirish Sutar; Ashok W. Deshpande (IICAI, 2005)

Fuzzy Medical Diagnostic Decision Support with Semiautomatic Knowledge Acquisition: A Case Study in Infectious Diseases. - Kavishwar B. Wagholikar; Ashok W. Deshpande (IICAI, 2007)

Fuzzy relation based modeling for medical diagnostic decision support: Case studies. - Kavishwar B. Wagholikar; Ashok W. Deshpande (Int. J. Knowl. Based Intell. Eng. Syst., 2008)

Human gene/protein synonym dictionary from WikiLinks. - Kavishwar B. Wagholikar; Manabu Torii; Hongfang Liu (BCB, 2011)

Empirical Ontologies for Cohort Identification. - Stephen T. Wu; Kavishwar B. Wagholikar; Sunghwan Sohn; Vinod Kaggal; Hongfang Liu (TREC, 2011)

Using machine learning for concept extraction on clinical documents from multiple data sources. - Manabu Torii; Kavishwar B. Wagholikar; Hongfang Liu (J. Am. Medical Informatics Assoc., 2011)

Towards a semantic lexicon for clinical natural language processing. - Hongfang Liu; Stephen T. Wu; Dingcheng Li; Siddhartha Jonnalagadda; Sunghwan Sohn; Kavishwar B. Wagholikar; Peter J. Haug; Stanley M. Huff; Christopher G. Chute (AMIA, 2012)

Clinical Decision Support with Natural Language Processing for Cervical Cancer Screening. - Kavishwar B. Wagholikar; Kathy L. MacLaughlin; Michael R. Henry; Robert A. Greenes; Ronald A. Hankey; Hongfang Liu; Rajeev Chaudhry (AMIA, 2012)

Asthma Status Identification with Natural Language Processing. - Stephen T. Wu; Young J. Juhn; Sunghwan Sohn; Ravikumar Komandur Elayavilli; Kavishwar B. Wagholikar; Siddhartha Jonnalagadda; Hongfang Liu (AMIA, 2012)

Classifying protein complexes from candidate subgraphs using fuzzy machine learning model. - Bo Xu 008; Hongfei Lin; Zhihao Yang; Kavishwar B. Wagholikar; Hongfang Liu (BIBM Workshops, 2012)

Systematic Analysis of Cross-Institutional Medication Description Patterns in Clinical Notes. - Sunghwan Sohn; Sean P. Murphy; Siddhartha Jonnalagadda; Kavishwar B. Wagholikar; Stephen T. Wu; Christopher G. Chute; Hongfang Liu; Scott R. Halgrim (HISB, 2012)

Clinical Decision Support for Colonoscopy Surveillance Using Natural Language Processing. - Kavishwar B. Wagholikar; Sunghwan Sohn; Stephen T. Wu; Vinod Kaggal; Sheila Buehler; Robert A. Greenes; Tsung-Teh Wu; David W. Larson; Hongfang Liu; Rajeev Chaudhry; Lisa Boardman (HISB, 2012)

Coreference analysis in clinical notes: a multi-pass sieve with alternate anaphora resolution modules. - Siddhartha Jonnalagadda; Dingcheng Li; Sunghwan Sohn; Stephen Tze-Inn Wu; Kavishwar B. Wagholikar; Manabu Torii; Hongfang Liu (J. Am. Medical Informatics Assoc., 2012)

Clinical decision support with automated text processing for cervical cancer screening. - Kavishwar B. Wagholikar; Kathy L. MacLaughlin; Michael R. Henry; Robert A. Greenes; Ronald A. Hankey; Hongfang Liu; Rajeev Chaudhry (J. Am. Medical Informatics Assoc., 2012)

Evaluation of Fuzzy Relation Method for Medical Decision Support. - Kavishwar B. Wagholikar; Sanjeev Mangrulkar; Ashok W. Deshpande; Vijayraghavan Sundararajan (J. Medical Syst., 2012)

Modeling Paradigms for Medical Diagnostic Decision Support: A Survey and Future Directions. - Kavishwar B. Wagholikar; Vijayraghavan Sundararajan; Ashok W. Deshpande (J. Medical Syst., 2012)

Decision Support can Improve Time Efficiency of Healthcare Providers for Deciding Preventive Care Recommendations. - Kavishwar B. Wagholikar; Ronald A. Hankey; Hongfang Liu; Rajeev Chaudhry (AMIA, 2013)

Integrated cTAKES for Concept Mention Detection and Normalization. - Hongfang Liu; Kavishwar B. Wagholikar; Siddhartha Jonnalagadda; Sunghwan Sohn (CLEF (Working Notes), 2013)

Pooling annotated corpora for clinical concept extraction. - Kavishwar B. Wagholikar; Manabu Torii; Siddhartha Jonnalagadda; Hongfang Liu (J. Biomed. Semant., 2013)

Comprehensive temporal information detection from clinical text: medical events, time, and TLINK identification. - Sunghwan Sohn; Kavishwar B. Wagholikar; Dingcheng Li; Siddhartha Jonnalagadda; Cui Tao; Ravikumar Komandur Elayavilli; Hongfang Liu (J. Am. Medical Informatics Assoc., 2013)

Research and applications: Formative evaluation of the accuracy of a clinical decision support system for cervical cancer screening. - Kavishwar B. Wagholikar; Kathy L. MacLaughlin; Thomas M. Kastner; Petra M. Casey; Michael R. Henry; Robert A. Greenes; Hongfang Liu; Rajeev Chaudhry (J. Am. Medical Informatics Assoc., 2013)

NLP enhances Quality Care Measures in Heart Failure. - Ravikumar Komandur Elayavilli; Kavishwar B. Wagholikar; Hongfang Liu (AMIA, 2014)

Challenges in adapting text mining for full text articles to assist pathway curation. - K. E. Ravikumar; Kavishwar B. Wagholikar; Hongfang Liu (BCB, 2014)

Towards Pathway Curation Through Literature Mining - A Case Study Using PharmGKB. - K. E. Ravikumar; Kavishwar B. Wagholikar; Hongfang Liu (Pacific Symposium on Biocomputing, 2014)

Detecting concept mentions in biomedical text using hidden Markov model: multiple concept types at once or one at a time? - Manabu Torii; Kavishwar B. Wagholikar; Hongfang Liu (J. Biomed. Semant., 2014)

Evaluation of the accuracy of CDS for cervical cancer screening and surveillance. - Kathy L. MacLaughlin; Ravikumar Komandur Elayavilli; Kavishwar B. Wagholikar; Marianne R. Scheitel; Hongfang Liu; Rajeev Chaudhry (AMIA, 2015)

Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature. - Ravikumar Komandur Elayavilli; Kavishwar B. Wagholikar; Dingcheng Li; Jean-Pierre A. Kocher; Hongfang Liu (BMC Bioinform., 2015)

Natural Language Processing Working Group Pre-Symposium: Graduate Student Consortium and 'Hackathon'. - Stéphane M. Meystre; Hongfang Liu; Rong Xu; Sivaram Arabandi; Kavishwar B. Wagholikar; Jon D. Patrick; Guergana K. Savova; Chunhua Weng; Pierre Zweigenbaum; Dina Demner-Fushman; Özlem Uzuner; Hua Xu 001 (AMIA, 2016)

Cajun Codefest 4.0 on SMART-on-FHIR apps for Diabetes. - Kavishwar B. Wagholikar; Rahul Jain; Eliel Oliveira; Henry Chu; Harshal Shah; Joshua C. Mandel; Jeffrey G. Klann; Sohail Rao; Kenneth D. Mandl; Shawn N. Murphy; Thomas Carton (AMIA, 2016)

Evaluation of SMART-on-FHIR I2b2 cell using PCORNET data model. - Kavishwar B. Wagholikar; Rahul Jain; Eliel Oliveira; Joshua C. Mandel; Jeffrey G. Klann; Prasad Patil; Kenneth D. Mandl; Shawn N. Murphy; Thomas Carton (AMIA, 2016)

Improving the Workflow of Curbside Consultation by Using Unstructured Clinical Notes - a Natural Language and Machine Learning-based Approach. - Wei-Hung Weng; Avni Khatri; Kavishwar B. Wagholikar; Adam Cohen; Henry Chueh (AMIA, 2016)

Read only SMART on FHIR Façade for I2b2. - Kavishwar B. Wagholikar; Joshua C. Mandel; Jeffrey G. Klann; Nich Wattanasin; Michael Mendis; Christopher G. Chute; Kenneth D. Mandl; Shawn N. Murphy (CRI, 2016)

Erratum to: Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature. - Ravikumar Komandur Elayavilli; Kavishwar B. Wagholikar; Dingcheng Li; Jean-Pierre A. Kocher; Hongfang Liu (BMC Bioinform., 2016)

Applying unsupervised learning to characterize rare observations in clinical data: the DQe-p tool. - Hossein Estiri; Jeffrey G. Klann; Kavishwar B. Wagholikar; Shawn N. Murphy (AMIA, 2017)

Web-Service-Enabled Apps for Research: SMART-on-FHIR for OMOP and PCORNet. - Jeffrey G. Klann; Kavishwar B. Wagholikar; Lori C. Phillips; Matthew A. Joss; Shawn N. Murphy (AMIA, 2017)

Computing Performance Analysis on Clinical Document-level Classification. - Wei-Hung Weng; Kavishwar B. Wagholikar; Henry Chueh (AMIA, 2017)

Evolving Research Data Sharing Networks to Clinical App Sharing Networks. - Kavishwar B. Wagholikar; Rahul Jain; Eliel Oliveira; Joshua C. Mandel; Jeffrey G. Klann; Ricardo Colas; Prasad Patil; Kuladip Yadav; Kenneth D. Mandl; Shawn N. Murphy (CRI, 2017)

Classifiers for Identifying the Medical Specialty of Clinical Documents. - Wei-Hung Weng; Kavishwar B. Wagholikar; Henry C. Chueh (CRI, 2017)

SMART-on-FHIR implemented over i2b2. - Kavishwar B. Wagholikar; Joshua C. Mandel; Jeffrey G. Klann; Nich Wattanasin; Michael Mendis; Christopher G. Chute; Kenneth D. Mandl; Shawn N. Murphy (J. Am. Medical Informatics Assoc., 2017)

Medical subdomain classification of clinical notes using a machine learning-based natural language processing approach. - Wei-Hung Weng; Kavishwar B. Wagholikar; Alexa T. McCray; Peter Szolovits; Henry C. Chueh (BMC Medical Informatics Decis. Mak., 2017)

On DXplain vocabulary development: Past and Present. - Mitchell J. Feldman; Kavishwar B. Wagholikar; Kathleen Famiglietti; Richard J. Kim; Edward P. Hoffer; Henry C. Chueh (AMIA, 2018)

Natural Language Processing to Detect High Information Findings for Patients at risk of Missed Diagnosis. - Tzu-I Yang; Chia-Ching Chou; Kavishwar B. Wagholikar; Mitchell J. Feldman; Henry C. Chueh (AMIA, 2018)

Improving the Accuracy of a Clinical Decision Support System for Cervical Cancer Screening and Surveillance. - K. E. Ravikumar; Kathy L. MacLaughlin; Marianne R. Scheitel; Maya Kessler; Kavishwar B. Wagholikar; Hongfang Liu; Rajeev Chaudhry (Appl. Clin. Inform., 2018)

Web services for data warehouses: OMOP and PCORnet on i2b2. - Jeffrey G. Klann; Lori C. Phillips; Christopher Herrick; Matthew A. Joss; Kavishwar B. Wagholikar; Shawn N. Murphy (J. Am. Medical Informatics Assoc., 2018)

Extraction of Ejection Fraction from Echocardiography Notes for Constructing a Cohort of Patients having Heart Failure with reduced Ejection Fraction (HFrEF). - Kavishwar B. Wagholikar; Christina M. Fischer; Alyssa P. Goodson; Christopher D. Herrick; Martin Rees; Eloy Toscano; Calum A. MacRae; Benjamin M. Scirica; Akshay S. Desai; Shawn N. Murphy (J. Medical Syst., 2018)

Implementation of informatics for integrating biology and the bedside (i2b2) platform as Docker containers. - Kavishwar B. Wagholikar; Pralav P. Dessai; Javier Sanz; Michael Mendis; Douglas S. Bell; Shawn N. Murphy (BMC Medical Informatics Decis. Mak., 2018)

Ontologies Enabling Computable Tables. - Jeffrey G. Klann; Nich Wattanasin; Michael Mendis; Matthew A. Joss; Hossein Estiri; Kavishwar B. Wagholikar; Shawn N. Murphy (AMIA, 2019)

Patient Stratification Process for enabling Clinical Interventions. - Kavishwar B. Wagholikar; Samuel J. Aronson; Benjamin Morgan Scirica; Akshay S. Desai; Shawn N. Murphy (AMIA, 2019)

Dynamic Phenotyping to facilitate Accrual for Prospective Clinical studies: A Case Study in Heart Failure. - Kavishwar B. Wagholikar; Christina M. Fischer; Alyssa P. Goodson; Christopher Herrick; Taylor Maclean; Katelyn Smith; Liliana Fera; Thomas Gaziano; Jacqueline Dunning; Joshua Bosque-Hamilton; Lina Matta; Eloy Toscano; et al. (AMIA, 2019)

Stratification of Patient Population for enabling data-driven Clinical Interventions using I2b2. - Kavishwar B. Wagholikar; Vishal Vernekar; Akshay Zagade; Yuri Ostrovsky; Shek-Wayne Chan; Alyssa P. Goodson; Ameet Pathak; Corey Glynn; Christopher Herrick; Shawn N. Murphy (AMIA, 2019)

Plugin for importing spreadsheets into Informatics for Integrating Biology and the Bedside platform. - Akshay Zagade; Vishal Vernekar; Shek-Wayne Chan; Kavishwar B. Wagholikar; Rupendra Chulyadyo; Yuri Ostrovsky; Alyssa P. Goodson; Ameet Pathak; Christopher Herrick; Shawn N. Murphy (AMIA, 2019)

High-throughput Phenotyping with EHR Sequences. - Shawn N. Murphy; Hossein Estiri; Zachary H. Strasser; Kavishwar B. Wagholikar; Victor M. Castro (AMIA, 2020)

Polar labeling: silver standard algorithm for training disease classifiers. - Kavishwar B. Wagholikar; Hossein Estiri; Marykate Murphy; Shawn N. Murphy (Bioinform., 2020)

Transitive Sequencing Medical Records for Mining Predictive and Interpretable Temporal Representations. - Hossein Estiri; Zachary H. Strasser; Jeffrey G. Klann; Thomas H. McCoy Jr.; Kavishwar B. Wagholikar; Sebastien Vasey; Victor M. Castro; Marykate Murphy; Shawn N. Murphy (Patterns, 2020)

Workflow Automation for a Virtual Hypertension Management Program. - Samuel J. Aronson; Benjamin M. Scirica; William J. Gordon; Alexander J. Blood; Kira Chaney; Eugene Clark; Corey Glynn; Remlee Green; John St. Laurent; Charlotte Mailly; Marian McPartlin; Shawn Murphy; et al. (Appl. Clin. Inform., 2021)

Validation of an internationally derived patient severity phenotype to support COVID-19 analytics from electronic health record data. - Jeffrey G. Klann; Hossein Estiri; Griffin M. Weber; Bertrand Moal; Paul Avillach; Chuan Hong; Amelia L. M. Tan; Brett K. Beaulieu-Jones; Victor M. Castro; Thomas Maulhardt; Alon Geva; Alberto Malovini; et al. (J. Am. Medical Informatics Assoc., 2021)

Predicting COVID-19 mortality with electronic medical records. - Hossein Estiri; Zachary H. Strasser; Jeffrey G. Klann; Pourandokht Naseri; Kavishwar B. Wagholikar; Shawn N. Murphy (npj Digit. Medicine, 2021)

An objective framework for evaluating unrecognized bias in medical AI models predicting COVID-19 outcomes. - Hossein Estiri; Zachary H. Strasser; Sina Rashidian; Jeffrey G. Klann; Kavishwar B. Wagholikar; Thomas H. McCoy Jr.; Shawn N. Murphy (J. Am. Medical Informatics Assoc., 2022)

International comparisons of laboratory values from the 4CE collaborative to predict COVID-19 mortality. - Griffin M. Weber; Chuan Hong; Zongqi Xia; Nicolas Paris; Miguel Pedrera-Jiménez; Ashley C. Pfaff; Emily R. Pfaff; Danielle Pillion; Sara Pizzimenti; Hans-Ulrich Prokosch; Robson A. Prudente; Andrea Prunotto; et al. (npj Digit. Medicine, 2022)

International electronic health record-derived post-acute sequelae profiles of COVID-19 patients. - Harrison G. Zhang; Arianna Dagliati; Zahra Shakeri Hossein Abad; Xin Xiong; Clara-Lea Bonzel; Zongqi Xia; Bryce W. Q. Tan; Paul Avillach; Gabriel A. Brat; Chuan Hong; Michele Morris; Shyam Visweswaran; et al. (npj Digit. Medicine, 2022)

I2b2-etl: Python application for importing electronic health data into the informatics for integrating biology and the bedside platform. - Kavishwar B. Wagholikar; Layne Ainsworth; David Zelle; Kira Chaney; Michael Mendis; Jeffrey G. Klann; Alexander J. Blood; Angela Miller; Rupendra Chulyadyo; Michael Oates; William J. Gordon; Samuel J. Aronson; et al. (Bioinform., 2022)

Principles and implementation strategies for equitable and representative academic partnerships in global health informatics research. - Elizabeth Campbell; Oliver J. Bear Don't Walk IV; Hamish S. F. Fraser; Judy Gichoya; Kavishwar B. Wagholikar; Andrew S. Kanter; Felix Holl; Sansanee Craig (J. Am. Medical Informatics Assoc., 2025)