SPLINDID: a semi-parametric, model-based method for obtaining transcription rates and gene regulation parameters from genomic and proteomic expression profiles. - Kavitha Bhasi; Alan Forrest; Murali Ramanathan (Bioinform., 2005)

VizStruct for visualization of genome-wide SNP analyses. - Kavitha Bhasi; Li Zhang 008; Daniel Brazeau; Aidong Zhang; Murali Ramanathan (Bioinform., 2006)