Distance Corrections on Recombinant Sequences. - David Bryant; Daniel H. Huson; Tobias H. Klöpper; Kay Nieselt-Struwe (WABI, 2003)

DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors. - Martin Schmollinger; Kay Nieselt; Michael Kaufmann 001; Burkhard Morgenstern (BMC Bioinform., 2004)

Whole-genome prokaryotic phylogeny. - Stefan R. Henz; Daniel H. Huson; Alexander F. Auch; Kay Nieselt-Struwe; Stephan C. Schuster (Bioinform., 2005)

A Framework for Visualization of Microarray Data and Integrated Meta Information. - Nils Gehlenborg; Janko Dietzsch; Kay Nieselt (Inf. Vis., 2005)

On the maximal cliques in c-max-tolerance graphs and their application in clustering molecular sequences. - Katharina Anna Lehmann; Michael Kaufmann 001; Stephan Steigele; Kay Nieselt (Algorithms Mol. Biol., 2006)

Mayday-a microarray data analysis workbench. - Janko Dietzsch; Nils Gehlenborg; Kay Nieselt (Bioinform., 2006)

ResqMi - a Versatile Algorithm and Software for Resequencing Microarrays. - Stephan Symons; Kirstin Weber; Michael Bonin; Kay Nieselt (German Conference on Bioinformatics, 2008)

Post-Hybridization Quality Measures for Oligos in Genome-Wide Microarray Experiments. - Florian Battke; Carsten Müller-Tidow; Hubert Serve; Kay Nieselt (WABI, 2008)

SpRay: A visual analytics approach for gene expression data. - Janko Dietzsch; Julian Heinrich; Kay Nieselt; Dirk Bartz (IEEE VAST, 2009)

Prequips - an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data. - Nils Gehlenborg; Wei Yan; Inyoul Y. Lee; Hyuntae Yoo; Kay Nieselt; Daehee Hwang; Ruedi Aebersold; Leroy Hood (Bioinform., 2009)

Visuelle Analytik für Genexpressionsdaten. - Kay Nieselt; Janko Dietzsch; Julian Heinrich; Albert Pritzkau; Martin Mosisch; Dirk Bartz (Datenbank-Spektrum, 2009)

Efficient Sequence Clustering for RNA-Seq Data without a Reference Genome. - Florian Battke; Stephan Körner; Steffen Hüttner; Kay Nieselt (GCB, 2010)

Mayday - integrative analytics for expression data. - Florian Battke; Stephan Symons; Kay Nieselt (BMC Bioinform., 2010)

Visuelle Analytik biologischer Daten. - Kay Nieselt; Michael Kaufmann 001; Andreas Gerasch; Hans-Peter Lenhof; Marcel Spehr; Stefan Hesse; Stefan Gumhold (Inform. Spektrum, 2010)

Integrative Systems Biology Visualization with MAYDAY. - Stephan Symons; Christian Zipplies; Florian Battke; Kay Nieselt (J. Integr. Bioinform., 2010)

TIALA - Time series alignment analysis. - Günter Jäger; Florian Battke; Kay Nieselt (BioVis, 2011)

iHAT: Interactive hierarchical aggregation table. - Corinna Vehlow; Julian Heinrich; Florian Battke; Daniel Weiskopf; Kay Nieselt (BioVis, 2011)

GaggleBridge: collaborative data analysis. - Florian Battke; Stephan Symons; Alexander Herbig; Kay Nieselt (Bioinform., 2011)

Identifying associations between amino acid changes and meta information in alignments. - Lucía Spangenberg; Florian Battke; Martí Graña; Kay Nieselt; Hugo Naya (Bioinform., 2011)

MGV: a generic graph viewer for comparative omics data. - Stephan Symons; Kay Nieselt (Bioinform., 2011)

nocoRNAc: Characterization of non-coding RNAs in prokaryotes. - Alexander Herbig; Kay Nieselt (BMC Bioinform., 2011)

GenomeRing: alignment visualization based on SuperGenome coordinates. - Alexander Herbig; Günter Jäger; Florian Battke; Kay Nieselt (Bioinform., 2012)

Reveal - visual eQTL analytics. - Günter Jäger; Florian Battke; Kay Nieselt (Bioinform., 2012)

An eQTL biological data visualization challenge and approaches from the visualization community. - Christopher W. Bartlett; Soo Yeon Cheong; Liping Hou; Jesse Paquette; Pek Yee Lum; Günter Jäger; Florian Battke; Corinna Vehlow; Julian Heinrich; Kay Nieselt; Ryo Sakai; Jan Aerts; et al. (BMC Bioinform., 2012)

iHAT: interactive Hierarchical Aggregation Table for Genetic Association Data. - Julian Heinrich; Corinna Vehlow; Florian Battke; Günter Jäger; Daniel Weiskopf; Kay Nieselt (BMC Bioinform., 2012)

Collact.Me: Conceptual Framework for Extracting Domain-Specific Content from Twitter. - Aydin Can Polatkan; Kay Nieselt (CGC, 2013)

Visualizing dimensionality reduction of systems biology data. - Andreas M. Lehrmann; Michael Huber 002; Aydin Can Polatkan; Albert Pritzkau; Kay Nieselt (Data Min. Knowl. Discov., 2013)

inPHAP: Interactive visualization of genotype and phased haplotype data. - Günter Jäger; Alexander Peltzer; Kay Nieselt (BMC Bioinform., 2014)

Highlights from the 5th Symposium on Biological Data Visualization: Part 1. - Jan Aerts; G. Elisabeta Marai; Kay Nieselt; Cydney B. Nielsen; Marc Streit; Daniel Weiskopf (BMC Bioinform., 2015)

Pan-Tetris: an interactive visualisation for Pan-genomes. - André Hennig; Jörg Bernhardt; Kay Nieselt (BMC Bioinform., 2015)

DACCOR - Detection, charACterization, and reconstruction of Repetitive regions in bacterial genomes. - Alexander Seitz; Friederike Hanssen; Kay Nieselt (PeerJ Prepr., 2017)

Visualization of Biological Data - Crossroads (Dagstuhl Seminar 18161). - Jan Aerts; Nils Gehlenborg; Georgeta Elisabeta Marai; Kay Katja Nieselt (Dagstuhl Reports, 2018)

Efficient merging of genome profile alignments. - André Hennig; Kay Nieselt (Bioinform., 2019)

DamageProfiler: fast damage pattern calculation for ancient DNA. - Judith Neukamm; Alexander Peltzer; Kay Nieselt (Bioinform., 2021)

Foreword: Special section on the Eurographics Workshop on Visual Computing for Biology and Medicine (EG VCBM) 2020. - Barbora Kozlíková; Michael Krone; Kay Nieselt; Renata G. Raidou; Noeska N. Smit (Comput. Graph., 2021)

Visualization of Biological Data - From Analysis to Communication (Dagstuhl Seminar 21401). - Karsten Klein 001; Georgeta Elisabeta Marai; Kay Katja Nieselt; Blaz Zupan (Dagstuhl Reports, 2021)

Foreword. - Kay Nieselt; Steffen Oeltze-Jafra; Thomas Schultz 001; Noeska N. Smit; Björn Sommer 001 (Comput. Graph., 2022)

Secondary Metabolite Transcriptomic Pipeline (SeMa-Trap), an expression-based exploration tool for increased secondary metabolite production in bacteria. - Mehmet Direnç Mungan; Theresa Anisja Harbig; Naybel Hernandez Perez; Simone Edenhart; Evi Stegmann; Kay Nieselt; Nadine Ziemert (Nucleic Acids Res., 2022)

A temporally quantized distribution of pupil diameters as a new feature for cognitive load classification. - Wolfgang Fuhl; Anne Herrmann-Werner; Kay Nieselt (ETRA, 2023)

The Tiny Eye Movement Transformer. - Wolfgang Fuhl; Anne Herrmann-Werner; Kay Nieselt (ETRA, 2023)

Area of interest adaption using feature importance. - Wolfgang Fuhl; Susanne Zabel; Theresa Anisja Harbig; Julia Astrid Moldt; Teresa Festl-Wietek; Anne Herrmann-Werner; Kay Nieselt (ETRA, 2023)

One step closer to EEG based eye tracking. - Wolfgang Fuhl; Susanne Zabel; Theresa Anisja Harbig; Julia Astrid Moldt; Teresa Festl-Wietek; Anne Herrmann-Werner; Kay Nieselt (ETRA, 2023)

PTMVision: An Interactive Visualization Platform for Post-Translational Modifications of Proteins. - Simon Hackl; Caroline Jachmann; Theresa Anisja Harbig; Mathias Witte Paz; Kay Nieselt (EuroVis (Posters), 2023)

Visual Linkage and Interactive Features of Evidente for an Enhanced Analysis of SNP-based Phylogenies. - Mathias Witte Paz; Theresa Anisja Harbig; Dolores Varga; Eileen Kränzle; Kay Nieselt (EuroVis (Posters), 2023)

Resource saving taxonomy classification with k-mer distributions and machine learning. - Wolfgang Fuhl; Susanne Zabel; Kay Nieselt (CoRR, 2023)

A temporally quantized distribution of pupil diameters as a new feature for cognitive load classification. - Wolfgang Fuhl; Susanne Zabel; Theresa Anisja Harbig; Julia Astrid Moldt; Teresa Festl Wiete; Anne Herrmann-Werner; Kay Nieselt (CoRR, 2023)

GO-Compass: Visual Navigation of Multiple Lists of GO terms. - Theresa Anisja Harbig; Mathias Witte Paz; Kay Nieselt (Comput. Graph. Forum, 2023)

BLASTphylo: An Interactive Web Tool for Taxonomic and Phylogenetic Analysis of Prokaryotic Genes. - Susanne Zabel; Jennifer Müller; Friedrich Götz; Kay Nieselt (J. Comput. Biol., 2023)

ProtEGOnist: Visual Analysis of Interactions in Small World Networks Using Ego-graphs. - Nicolas Brich; Theresa Anisja Harbig; Mathias Witte Paz; Kay Nieselt; Michael Krone (Comput. Graph. Forum, 2024)

VIPurPCA: Visualizing and Propagating Uncertainty in Principal Component Analysis. - Susanne Zabel; Philipp Hennig; Kay Nieselt (IEEE Trans. Vis. Comput. Graph., 2024)

Scanpath Classification with an n-mer Deep Neural Network Architecture. - Wolfgang Fuhl; Susanne Zabel; Kay Nieselt (ETRA, 2025)

Approaching the holistic transcriptome - convolution and deconvolution in transcriptomics. - Maik Wolfram-Schauerte; Thomas Vogel 008; Hanati Tuoken; Maria Faelth Savitski; Eric Simon; Kay Nieselt (Briefings Bioinform., 2025)