A Proposal for a Gene Functions Wiki. - Robert Hoehndorf; Kay Prüfer; Michael Backhaus; Heinrich Herre; Janet Kelso; Frank Loebe; Johann Visagie (OTM Workshops (1), 2006)

FUNC: a package for detecting significant associations between gene sets and ontological annotations. - Kay Prüfer; Bjoern Muetzel; Hong Hai Do; Gunter Weiss; Philipp Khaitovich; Erhard Rahm; Svante Pääbo; Michael Lachmann; Wolfgang Enard (BMC Bioinform., 2007)

PatMaN: rapid alignment of short sequences to large databases. - Kay Prüfer; Udo Stenzel; Michael Dannemann; Richard E. Green; Michael Lachmann; Janet Kelso (Bioinform., 2008)

BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology. - Robert Hoehndorf; Joshua Bacher; Michael Backhaus; Sergio E. Gregorio Jr.; Frank Loebe; Kay Prüfer; Alexandr Uciteli; Johann Visagie; Heinrich Herre; Janet Kelso (BMC Bioinform., 2009)

Impact of ontology evolution on functional analyses. - Anika Groß; Michael Hartung; Kay Prüfer; Janet Kelso; Erhard Rahm (Bioinform., 2012)

ABAEnrichment: an R package to test for gene set expression enrichment in the adult and developing human brain. - Steffi Grote; Kay Prüfer; Janet Kelso; Michael Dannemann (Bioinform., 2016)

snpAD: an ancient DNA genotype caller. - Kay Prüfer (Bioinform., 2018)