Supervised learning is an accurate method for network-based gene classification. - Renming Liu; Christopher A. Mancuso; Anna Yannakopoulos; Kayla A. Johnson; Arjun Krishnan (Bioinform., 2020)

CONE: COntext-specific Network Embedding via Contextualized Graph Attention. - Renming Liu; Hao Yuan; Kayla A. Johnson; Arjun Krishnan (MLCB, 2024)

Annotating publicly-available samples and studies using interpretable modeling of unstructured metadata. - Hao Yuan; Parker Hicks; Mansooreh Ahmadian; Kayla A. Johnson; Lydia Valtadoros; Arjun Krishnan (Briefings Bioinform., 2024)

Joint representation of molecular networks from multiple species improves gene classification. - Christopher A. Mancuso; Kayla A. Johnson; Renming Liu; Arjun Krishnan (PLoS Comput. Biol., 2024)