New Heuristics for Clustering Large Biological Networks. - Md. Kishwar Shafin; Kazi Lutful Kabir; Iffatur Ridwan; Tasmiah Tamzid Anannya; Rashid Saadman Karim; Mohammad Mozammel Hoque; M. Sohel Rahman (ISBRA, 2015)

Impact of heuristics in clustering large biological networks. - Md. Kishwar Shafin; Kazi Lutful Kabir; Iffatur Ridwan; Tasmiah Tamzid Anannya; Rashid Saadman Karim; Mohammad Mozammel Hoque; M. Sohel Rahman (Comput. Biol. Chem., 2015)

From molecular energy landscapes to equilibrium dynamics via landscape analysis and markov state models. - Kazi Lutful Kabir; Nasrin Akhter; Amarda Shehu (J. Bioinform. Comput. Biol., 2019)

Decoy Selection in Protein Structure Determination via Symmetric Non-negative Matrix Factorization. - Kazi Lutful Kabir; Gopinath Chennupati; Raviteja Vangara; Hristo N. Djidjev; Boian S. Alexandrov; Amarda Shehu (BIBM, 2020)

Antigen Binding Reshapes Antibody Energy Landscape and Conformation Dynamics. - Kazi Lutful Kabir; Ruth Nussinov; Buyong Ma; Amarda Shehu (BIBM, 2021)

Single Model Quality Estimation of Protein Structures via Non-negative Tensor Factorization. - Kazi Lutful Kabir; Manish Bhattarai; Boian S. Alexandrov; Amarda Shehu (ICCABS, 2021)

Improved Protein Decoy Selection via Non-Negative Matrix Factorization. - Nasrin Akhter; Kazi Lutful Kabir; Gopinath Chennupati; Raviteja Vangara; Boian S. Alexandrov; Hristo N. Djidjev; Amarda Shehu (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)