Drug targets for tumorigenesis: Insights from structural analysis of EGFR signaling network. - Saliha Durmus Tekir; Kazim Yalçin Arga; Kutlu Ö. Ülgen (J. Biomed. Informatics, 2009)

Genome-scale reconstruction of metabolic network for a halophilic extremophile, Chromohalobacter salexigens DSM 3043. - Özlem Ates; Ebru Oner; Kazim Yalçin Arga (BMC Syst. Biol., 2011)

Assessment of high-confidence protein-protein interactome in yeast. - Kubra Karagoz; Kazim Yalçin Arga (Comput. Biol. Chem., 2013)

A system based network approach to ethanol tolerance in Saccharomyces cerevisiae. - Ceyda Kasavi; Serpil Eraslan; Kazim Yalçin Arga; Ebru Oner; Betül Kirdar (BMC Syst. Biol., 2014)

Network-based approach to identify molecular signatures and therapeutic agents in Alzheimer's disease. - Md. Rezanur Rahman; Tania Islam; Beste Turanli; Toyfiquz Zaman; Hossain Md. Faruquee; Md. Mafizur Rahman; Md. Nurul Haque Mollah; Ranjan Kumar Nanda; Kazim Yalçin Arga; Esra Gov; Mohammad Ali Moni (Comput. Biol. Chem., 2019)

Differential Interactome Based Drug Repositioning Unraveled Abacavir, Exemestane, Nortriptyline Hydrochloride, and Tolcapone as Potential Therapeutics for Colorectal Cancers. - Hande Beklen; Sema Arslan; Gizem Gulfidan; Beste Turanli; Pemra Ozbek; Betül Karademir Yilmaz; Kazim Yalçin Arga (Frontiers Bioinform., 2021)

Three candidate anticancer drugs were repositioned by integrative analysis of the transcriptomes of species with different regenerative abilities after injury. - Elif Kubat Oktem; Ummuhan Demir; Metin Yazar; Kazim Yalçin Arga (Comput. Biol. Chem., 2023)