Development of an Affinity Evaluation and Prediction System by Using the Shape complementarity Characteristic between proteins. - Koki Tsukamoto; Tatsuya Yoshikawa; Yuichiro Hourai; Kazuhiko Fukui; Yutaka Akiyama (J. Bioinform. Comput. Biol., 2008)

Improving the Accuracy of an Affinity Prediction Method by Using Statistics on Shape Complementarity between Proteins. - Tatsuya Yoshikawa; Koki Tsukamoto; Yuichiro Hourai; Kazuhiko Fukui (J. Chem. Inf. Model., 2009)

TMFunction: database for functional residues in membrane proteins. - M. Michael Gromiha; Yukimitsu Yabuki; M. Xavier Suresh; A. Mary Thangakani; Makiko Suwa; Kazuhiko Fukui (Nucleic Acids Res., 2009)

Sequence and structural features of binding site residues in protein-protein complexes. - M. Michael Gromiha; N. Saranya; Samuel Selvaraj; B. Jayaram 001; Kazuhiko Fukui (BIBM, 2010)

Identification and Analysis of Binding Site Residues in Protein Complexes: Energy Based Approach. - M. Michael Gromiha; Samuel Selvaraj; B. Jayaram 001; Kazuhiko Fukui (ICIC (1), 2010)

Structure-Function Relationship in Olfactory Receptors. - M. Michael Gromiha; R. Sowdhamini; Kazuhiko Fukui (ICIC (3), 2011)

Scoring Function Based Approach for Locating Binding Sites and Understanding Recognition Mechanism of Protein-DNA Complexes. - M. Michael Gromiha; Kazuhiko Fukui (J. Chem. Inf. Model., 2011)

Relationship between amino acid properties and functional parameters in olfactory receptors and discrimination of mutants with enhanced specificity. - M. Michael Gromiha; K. Harini; R. Sowdhamini; Kazuhiko Fukui (BMC Bioinform., 2012)

Prospects for Tertiary Structure Prediction of RNA Based on Secondary Structure Information. - Satoshi Yamasaki; Shugo Nakamura; Kazuhiko Fukui (J. Chem. Inf. Model., 2012)

Tertiary Structure Prediction of RNA-RNA Complexes Using a Secondary Structure and Fragment-Based Method. - Satoshi Yamasaki; Takatsugu Hirokawa; Kiyoshi Asai; Kazuhiko Fukui (J. Chem. Inf. Model., 2014)

ToGo-WF: prediction of RNA tertiary structures and RNA-RNA/protein interactions using the KNIME workflow. - Satoshi Yamasaki; Takayuki Amemiya; Yukimitsu Yabuki; Katsuhisa Horimoto; Kazuhiko Fukui (J. Comput. Aided Mol. Des., 2019)

Phosprof: pathway analysis database of drug response based on phosphorylation activity measurements. - Harumi Kagiwada; Chie Motono; Katsuhisa Horimoto; Kazuhiko Fukui (Database J. Biol. Databases Curation, 2022)