YAMATO and ASUKA: DNA database management system. - Hajime Kitakami; Tadasu Shin-I; Kazuho Ikeo; Yoshihiro Ugawa; Naruya Saitou; Takashi Gojobori; Yoshio Tateno (HICSS (5), 1995)

Formal design and implementation of an improved DDBJ DNA database with a new schema and object-oriented library. - Toshitsugu Okayama; Takuro Tamura; Takashi Gojobori; Yoshio Tateno; Kazuho Ikeo; Satoru Miyazaki; Kaoru Fukami-Kobayashi; Hideaki Sugawara (Bioinform., 1998)

DBJ in the stream of various biological data. - Satoru Miyazaki; Hideaki Sugawara; Kazuho Ikeo; Takashi Gojobori; Yoshio Tateno (Nucleic Acids Res., 2004)

The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms. - Motohiko Tanino; Marie-Anne Debily; Takuro Tamura; Teruyoshi Hishiki; Osamu Ogasawara; Katsuji Murakawa; Shoko Kawamoto; Kouichi Itoh; Shinya Watanabe; Sandro José de Souza; Sandrine Imbeaud; Esther Graudens; et al. (Nucleic Acids Res., 2005)

The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. - Hajime Ohyanagi; Tsuyoshi Tanaka; Hiroaki Sakai; Yasumasa Shigemoto; Kaori Yamaguchi; Takuya Habara; Yasuyuki Fujii; Baltazar A. Antonio; Yoshiaki Nagamura; Tadashi Imanishi; Kazuho Ikeo; Takeshi Itoh; et al. (Nucleic Acids Res., 2006)

Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees. - Akihiro Matsuya; Ryuichi Sakate; Yoshihiro Kawahara; Kanako O. Koyanagi; Yoshiharu Sato; Yasuyuki Fujii; Chisato Yamasaki; Takuya Habara; Hajime Nakaoka; Fusano Todokoro; Kaori Yamaguchi; Toshinori Endo; et al. (Nucleic Acids Res., 2008)

Optimized ancestral state reconstruction using Sankoff parsimony. - José Carlos Clemente; Kazuho Ikeo; Gabriel Valiente; Takashi Gojobori (BMC Bioinform., 2009)

DDBJ dealing with mass data produced by the second generation sequencer. - Hideaki Sugawara; Kazuho Ikeo; Satoshi Fukuchi; Takashi Gojobori; Yoshio Tateno (Nucleic Acids Res., 2009)

Maser: one-stop platform for NGS big data from analysis to visualization. - Sonoko Kinjo; Norikazu Monma; Sadahiko Misu; Norikazu Kitamura; Junichi Imoto; Kazutoshi Yoshitake; Takashi Gojobori; Kazuho Ikeo (Database J. Biol. Databases Curation, 2018)