PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences. - Kazutaka Katoh; Hiroyuki Toh (Bioinform., 2007)

Recent developments in the MAFFT multiple sequence alignment program. - Kazutaka Katoh; Hiroyuki Toh (Briefings Bioinform., 2008)

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. - Kazutaka Katoh; Hiroyuki Toh (BMC Bioinform., 2008)

Parallelization of the MAFFT multiple sequence alignment program. - Kazutaka Katoh; Hiroyuki Toh (Bioinform., 2010)

Adding unaligned sequences into an existing alignment using MAFFT and LAST. - Kazutaka Katoh; Martin C. Frith (Bioinform., 2012)

aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity. - Shigehiro Kuraku; Christian M. Zmasek; Osamu Nishimura; Kazutaka Katoh (Nucleic Acids Res., 2013)

GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters. - Itamar Sela; Haim Ashkenazy; Kazutaka Katoh; Tal Pupko (Nucleic Acids Res., 2015)

A simple method to control over-alignment in the MAFFT multiple sequence alignment program. - Kazutaka Katoh; Daron M. Standley (Bioinform., 2016)

Application of the MAFFT sequence alignment program to large data - reexamination of the usefulness of chained guide trees. - Kazunori D. Yamada; Kentaro Tomii; Kazutaka Katoh (Bioinform., 2016)

Parallelization of MAFFT for large-scale multiple sequence alignments. - Tsukasa Nakamura; Kazunori D. Yamada; Kentaro Tomii; Kazutaka Katoh (Bioinform., 2018)

MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. - Kazutaka Katoh; John Rozewicki; Kazunori D. Yamada (Briefings Bioinform., 2019)

MAFFT-DASH: integrated protein sequence and structural alignment. - John Rozewicki; Songling Li; Karlou Mar Amada; Daron M. Standley; Kazutaka Katoh (Nucleic Acids Res., 2019)