Re-examination of structure optimization of off-lattice protein AB models by conformational space annealing. - Jinwoo Lee; Keehyoung Joo; Seung-Yeon Kim; Jooyoung Lee 002 (J. Comput. Chem., 2008)

A Visual Analytics Approach for Protein Disorder Prediction. - Jaegul Choo; Fuxin Li; Keehyoung Joo; Haesun Park (Expanding the Frontiers of Visual Analytics and Visualization, 2012)

Subgrouping Automata: Automatic sequence subgrouping using phylogenetic tree-based optimum subgrouping algorithm. - Joo-Hyun Seo; Jihyang Park; Eun-Mi Kim; Juhan Kim; Keehyoung Joo; Jooyoung Lee 002; Byung-Gee Kim (Comput. Biol. Chem., 2014)

Sigma-RF: prediction of the variability of spatial restraints in template-based modeling by random forest. - Juyong Lee; Kiho Lee; InSuk Joung; Keehyoung Joo; Bernard R. Brooks; Jooyoung Lee 002 (BMC Bioinform., 2015)

Prediction of Protein Structure by Template-Based Modeling Combined with the UNRES Force Field. - Pawel Krupa; Magdalena A. Mozolewska; Keehyoung Joo; Jooyoung Lee 002; Cezary Czaplewski; Adam Liwo (J. Chem. Inf. Model., 2015)

Use of Restraints from Consensus Fragments of Multiple Server Models To Enhance Protein-Structure Prediction Capability of the UNRES Force Field. - Magdalena A. Mozolewska; Pawel Krupa; Bartlomiej Zaborowski; Adam Liwo; Jooyoung Lee 002; Keehyoung Joo; Cezary Czaplewski (J. Chem. Inf. Model., 2016)

Ergodicity and model quality in template-restrained canonical and temperature/Hamiltonian replica exchange coarse-grained molecular dynamics simulations of proteins. - Agnieszka S. Karczynska; Cezary Czaplewski; Pawel Krupa; Magdalena A. Mozolewska; Keehyoung Joo; Jooyoung Lee 002; Adam Liwo (J. Comput. Chem., 2017)

Protein Loop Structure Prediction Using Conformational Space Annealing. - Seungryong Heo; Juyong Lee; Keehyoung Joo; Hang-Cheol Shin; Jooyoung Lee 002 (J. Chem. Inf. Model., 2017)

Conformational Space Annealing explained: A general optimization algorithm, with diverse applications. - InSuk Joung; Jong Yun Kim; Steven P. Gross; Keehyoung Joo; Jooyoung Lee 002 (Comput. Phys. Commun., 2018)

ConDo: protein domain boundary prediction using coevolutionary information. - Seung Hwan Hong; Keehyoung Joo; Jooyoung Lee (Bioinform., 2019)

Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13. - Agnieszka S. Karczynska; Karolina Zieba; Urszula Uciechowska; Magdalena A. Mozolewska; Pawel Krupa; Emilia A. Lubecka; Agnieszka G. Lipska; Celina Sikorska; Sergey A. Samsonov; Adam K. Sieradzan; Artur Gieldon; Adam Liwo; et al. (J. Chem. Inf. Model., 2020)

Application of conformational space annealing to the protein structure modeling using cryo-EM maps. - Jimin Park; InSuk Joung; Keehyoung Joo; Jooyoung Lee 002 (J. Comput. Chem., 2023)

DeepFold: enhancing protein structure prediction through optimized loss functions, improved template features, and re-optimized energy function. - Jae-Won Lee; Jong-Hyun Won; Seonggwang Jeon; Yujin Choo; Yubin Yeon; Jin-Seon Oh; Minsoo Kim; Seonhwa Kim; InSuk Joung; Cheongjae Jang; Sung Jong Lee; Tae Hyun Kim; et al. (Bioinform., 2023)