Isoreflectance contours for medical imaging. - Kei-Hoi Cheung; Martin D. Fox (IEEE Trans. Biomed. Eng., 1988)

Fuzzy classification of heart rate trends and artifacts. - Dean F. Sittig; Kei-Hoi Cheung; Lewis Berman (CBMS, 1992)

Application of Technology: Internet-based Support for Bioscience Research: A Collaborative Genome center for Human Chromosome 12. - Perry L. Miller; Prakash M. Nadkarni; Kenneth K. Kidd; Kei-Hoi Cheung; David C. Ward; Amy Banks; Patricia Bray-Ward; Lisa Cupelli; Valerie Herdman; Ivonne Marondel; Kate Montcomery; Beatrice Renault; et al. (J. Am. Medical Informatics Assoc., 1995)

DNA Workbench: A Database Package to Manage Regional Physical Mapping. - Prakash M. Nadkarni; Kei-Hoi Cheung; C. Castiglione; Perry L. Miller; Kenneth K. Kidd (J. Comput. Biol., 1996)

Automatic query mapping among genomic databases: a pilot exploration. - Kei-Hoi Cheung; Prakash M. Nadkarni; Perry L. Miller; Dong-Guk Shin (AMIA, 1998)

A simple model capable of expressing meta-data for database interoperability. - Kei-Hoi Cheung; Dong-Guk Shin (CATA, 1998)

A Framework Designed to Represent Both Data and Meta-Data to Enhance Database Interoperability. - Kei-Hoi Cheung; Dong-Guk Shin (IADT, 1998)

A metadata approach to query interoperation between molecular biology databases. - Kei-Hoi Cheung; Prakash M. Nadkarni; Dong-Guk Shin (Bioinform., 1998)

Graphically-enabled integration of bioinformatics tools allowing parallel execution. - Kei-Hoi Cheung; Perry L. Miller; A. H. Sherman; Stephen B. Weston; Eric Stratmann; Martin H. Schultz; Michael Snyder 001; Anuj Kumar (AMIA, 2000)

A Graph-based Meta-data Framework for Interoperation between Genome Databases. - Kei-Hoi Cheung; Dong-Guk Shin (BIBE, 2000)

ALFRED: an allele frequency database for diverse populations and DNA polymorphisms. - Kei-Hoi Cheung; Michael V. Osier; Judith R. Kidd; Andrew J. Pakstis; Perry L. Miller; Kenneth K. Kidd (Nucleic Acids Res., 2000)

TRIPLES: a database of gene function in Saccharomyces cerevisiae. - Anuj Kumar; Kei-Hoi Cheung; Petra Ross-MacDonald; Paulo S. R. Coelho; Perry L. Miller; Michael Snyder 001 (Nucleic Acids Res., 2000)

A metadata framework for interoperating heterogeneous genome data using XML. - Kei-Hoi Cheung; Aniruddha M. Deshpande; Nick P. Tosches; S. Nath; A. Agrawal; Perry L. Miller; Anuj Kumar; Michael Snyder 001 (AMIA, 2001)

An XML Application For Genomic Data Interoperation. - Kei-Hoi Cheung; Yang Liu 023; Anuj Kumar; Michael Snyder 001; Mark Gerstein; Perry L. Miller (BIBE, 2001)

ALFRED: an allele frequency database for diverse populations and DNA polymorphisms - an update. - Michael V. Osier; Kei-Hoi Cheung; Judith R. Kidd; Andrew J. Pakstis; Perry L. Miller; Kenneth K. Kidd (Nucleic Acids Res., 2001)

YMD: a microarray database for large-scale gene expression analysis. - Kei-Hoi Cheung; Kevin P. White; Janet Hager; Mark Gerstein; Valerie Reinke; Kenneth Nelson; Peter Masiar; Ranjana Srivastava; Yuli Li; Ju Li; Hongyu Zhao 003; Jinming Li; et al. (AMIA, 2002)

A dynamic approach to mapping coordinates between microplates and microarrays. - Kei-Hoi Cheung; Janet Hager; Kenneth Nelson; Kevin P. White; Yuli Li; Michael Snyder 001; Kenneth R. Williams; Perry L. Miller (J. Biomed. Informatics, 2002)

The TRIPLES database: a community resource for yeast molecular biology. - Anuj Kumar; Kei-Hoi Cheung; Nick P. Tosches; Peter Masiar; Yang Liu 023; Perry L. Miller; Michael Snyder 001 (Nucleic Acids Res., 2002)

PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis. - Deyun Pan; Ning Sun; Kei-Hoi Cheung; Zhong Guan; Ligeng Ma; Matthew Holford; Xingwang Deng; Hongyu Zhao 003 (BMC Bioinform., 2003)

ALFRED: the ALelle FREquency Database. Update. - Haseena Rajeevan; Michael V. Osier; Kei-Hoi Cheung; H. Deng; L. Druskin; R. Heinzen; Judith R. Kidd; S. Stein; Andrew J. Pakstis; Nick P. Tosches; C.-C. Yeh; Perry L. Miller; et al. (Nucleic Acids Res., 2003)

A XML-Based Approach to Integrating Heterogeneous Yeast Genome Data. - Kei-Hoi Cheung; Deyun Pan; Andrew K. Smith; Michael R. Seringhaus; Shawn M. Douglas; Mark Gerstein (METMBS, 2004)

A web services choreography scenario for interoperating bioinformatics applications. - Remko de Knikker; Youjun Guo; Jin-Long Li; Albert K. H. Kwan; Kevin Y. Yip; David W. Cheung; Kei-Hoi Cheung (BMC Bioinform., 2004)

Handling multiple testing while interpreting microarrays with the Gene Ontology Database. - Michael V. Osier; Hongyu Zhao 003; Kei-Hoi Cheung (BMC Bioinform., 2004)

Identifying projected clusters from gene expression profiles. - Kevin Y. Yip; David W. Cheung; Michael K. Ng 001; Kei-Hoi Cheung (J. Biomed. Informatics, 2004)

KARMA: a web server application for comparing and annotating heterogeneous microarray platforms. - Kei-Hoi Cheung; Janet Hager; Deyun Pan; Ranjana Srivastava; Shrikant M. Mane; Yuli Li; Perry L. Miller; Kenneth R. Williams (Nucleic Acids Res., 2004)

YPED: A Proteomics Database for Protein Expression Analysis. - Mark A. Shifman; Kexin Sun; Christopher M. Colangelo; Kei-Hoi Cheung; Perry L. Miller; Kenneth R. Williams (AMIA, 2005)

YeastHub: a semantic web use case for integrating data in the life sciences domain. - Kei-Hoi Cheung; Kevin Y. Yip; Andrew K. Smith; Remko de Knikker; Andy Masiar; Mark Gerstein (ISMB (Supplement of Bioinformatics), 2005)

Case Report: A High Productivity/Low Maintenance Approach to High-performance Computation for Biomedicine: Four Case Studies. - Nicholas Carriero; Michael V. Osier; Kei-Hoi Cheung; Perry L. Miller; Mark Gerstein; Hongyu Zhao 003; Baolin Wu; Scott Rifkin; Joseph T. Chang; Heping Zhang; Kevin P. White; Kenneth R. Williams; et al. (J. Am. Medical Informatics Assoc., 2005)

Using Web Ontology Language to Integrate Heterogeneous Databases in the Neurosciences. - Hugo Y. K. Lam; Luis N. Marenco; Gordon M. Shepherd; Perry L. Miller; Kei-Hoi Cheung (AMIA, 2006)

SemBiosphere: A Semantic Web Approach to Recommending Microarray Clustering Services. - Kevin Y. Yip; Peishen Qi; Martin H. Schultz; David W. Cheung; Kei-Hoi Cheung (Pacific Symposium on Biocomputing, 2006)

A semantic web approach to biological pathway data reasoning and integration. - Kei-Hoi Cheung; Peishen Qi; David Tuck; Michael Krauthammer (J. Web Semant., 2006)

Ontology-Based Data Integration For Biomedical Research. - Vipul Kashyap; Kei-Hoi Cheung; Donald Doherty; Matthias Samwald; M. Scott Marshall; Joanne Luciano; Susie Stephens; Ivan Herman; Raymond Hookway (The Semantic Web: Real-World Applications from Industry, 2007)

SenseLab: new developments in disseminating neuroscience information. - Chiquito J. Crasto; Luis N. Marenco; Nian Liu; Thomas M. Morse; Kei-Hoi Cheung; Peter C. Lai; Gautam Bahl; Peter Masiar; Hugo Y. K. Lam; Ernest Lim; Huajun Chen; Prakash M. Nadkarni; et al. (Briefings Bioinform., 2007)

Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics. - Andrew K. Smith; Kei-Hoi Cheung; Michael Krauthammer; Martin H. Schultz; Mark Gerstein (Bioinform., 2007)

AlzPharm: integration of neurodegeneration data using RDF. - Hugo Y. K. Lam; Luis N. Marenco; Tim Clark; Yong Gao; June Kinoshita; Gordon M. Shepherd; Perry L. Miller; Elizabeth Wu; Gwendolyn T. Wong; Nian Liu; Chiquito J. Crasto; Thomas M. Morse; et al. (BMC Bioinform., 2007)

Advancing translational research with the Semantic Web. - Alan Ruttenberg; Tim Clark; William J. Bug; Matthias Samwald; Olivier Bodenreider; Helen Chen; Donald Doherty; Kerstin Forsberg; Yong Gao; Vipul Kashyap; June Kinoshita; Joanne Luciano; et al. (BMC Bioinform., 2007)

LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics. - Andrew K. Smith; Kei-Hoi Cheung; Kevin Y. Yip; Martin H. Schultz; Mark Gerstein (BMC Bioinform., 2007)

An interdepartmental Ph.D. program in computational biology and bioinformatics: The Yale perspective. - Mark Gerstein; Dov Greenbaum; Kei-Hoi Cheung; Perry L. Miller (J. Biomed. Informatics, 2007)

Report on semantic web for health care and life sciences workshop. - Huajun Chen; Kei-Hoi Cheung; Michel Dumontier; Eric Prud'hommeaux; Alan Ruttenberg; Susie Stephens; Yimin Wang (WWW, 2008)

Case Report: Development of Grid-like Applications for Public Health Using Web 2.0 Mashup Techniques. - Matthew Scotch; Kevin Y. Yip; Kei-Hoi Cheung (J. Am. Medical Informatics Assoc., 2008)

Semantic mashup of biomedical data. - Kei-Hoi Cheung; Vipul Kashyap; Joanne Luciano; Huajun Chen; Yimin Wang; Susie Stephens (J. Biomed. Informatics, 2008)

HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0. - Kei-Hoi Cheung; Kevin Y. Yip; Jeffrey P. Townsend; Matthew Scotch (J. Biomed. Informatics, 2008)

Linking Open Drug Data. - Anja Jentzsch; Jun Zhao 003; Oktie Hassanzadeh; Kei-Hoi Cheung; Matthias Samwald; Bo Andersson (I-SEMANTICS, 2009)

Entrez Neuron RDFa: A Pragmatic Semantic Web Application for Data Integration in Neuroscience Research. - Matthias Samwald; Ernest Lim; Peter Masiar; Luis N. Marenco; Huajun Chen; Thomas M. Morse; Pradeep Mutalik; Gordon M. Shepherd; Perry L. Miller; Kei-Hoi Cheung (MIE, 2009)

Approaches to neuroscience data integration. - Kei-Hoi Cheung; Ernest Lim; Matthias Samwald; Huajun Chen; Luis N. Marenco; Matthew Holford; Thomas M. Morse; Pradeep Mutalik; Gordon M. Shepherd; Perry L. Miller (Briefings Bioinform., 2009)

Semantic Web for Health Care and Life Sciences: a review of the state of the art. - Kei-Hoi Cheung; Eric Prud'hommeaux; Yimin Wang; Susie Stephens (Briefings Bioinform., 2009)

Bringing Web 2.0 to bioinformatics. - Zhang Zhang 002; Kei-Hoi Cheung; Jeffrey P. Townsend (Briefings Bioinform., 2009)

A journey to Semantic Web query federation in the life sciences. - Kei-Hoi Cheung; H. Robert Frost; M. Scott Marshall; Eric Prud'hommeaux; Matthias Samwald; Jun Zhao 003; Adrian Paschke (BMC Bioinform., 2009)

Pseudofam: the pseudogene families database. - Hugo Y. K. Lam; Ekta Khurana; Gang Fang; Philip Cayting; Nicholas Carriero; Kei-Hoi Cheung; Mark B. Gerstein (Nucleic Acids Res., 2009)

Provenance of Microarray Experiments for a Better Understanding of Experiment Results. - Helena F. Deus; Jun Zhao 003; Satya S. Sahoo; Matthias Samwald; Eric Prud'hommeaux; Michael Miller 001; M. Scott Marshall; Kei-Hoi Cheung (SWPM@ISWC, 2010)

Analysis of Cancer Omics Data In A Semantic Web Framework. - Matthew Holford; Jamie P. McCusker; Kei-Hoi Cheung; Michael Krauthammer (SWAT4LS, 2010)

Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience. - Matthias Samwald; Huajun Chen; Alan Ruttenberg; Ernest Lim; Luis N. Marenco; Perry L. Miller; Gordon M. Shepherd; Kei-Hoi Cheung (Artif. Intell. Medicine, 2010)

Using semantic web rules to reason on an ontology of pseudogenes. - Matthew Holford; Ekta Khurana; Kei-Hoi Cheung; Mark Gerstein (Bioinform., 2010)

Enhancing phylogeography by improving geographical information from GenBank. - Matthew Scotch; Indra Neil Sarkar; Changjiang Mei; Robert Leaman; Kei-Hoi Cheung; Pierina Ortiz; Ashutosh Singraur; Graciela Gonzalez 001 (J. Biomed. Informatics, 2011)

A semantic web framework to integrate cancer omics data with biological knowledge. - Matthew Holford; Jamie P. McCusker; Kei-Hoi Cheung; Michael Krauthammer (BMC Bioinform., 2012)

Utilizing protein structure to identify non-random somatic mutations. - Gregory A. Ryslik; Yuwei Cheng; Kei-Hoi Cheung; Yorgo Modis; Hongyu Zhao 003 (BMC Bioinform., 2013)

A spatial simulation approach to account for protein structure when identifying non-random somatic mutations. - Gregory A. Ryslik; Yuwei Cheng; Kei-Hoi Cheung; Robert D. Bjornson; Daniel Zelterman; Yorgo Modis; Hongyu Zhao 003 (BMC Bioinform., 2014)

A graph theoretic approach to utilizing protein structure to identify non-random somatic mutations. - Gregory A. Ryslik; Yuwei Cheng; Kei-Hoi Cheung; Yorgo Modis; Hongyu Zhao 003 (BMC Bioinform., 2014)

SenseLab: Integration of Multidisciplinary Neuroscience Data. - Gordon M. Shepherd; Thomas M. Morse; Luis N. Marenco; Kei-Hoi Cheung; Ted Carnevale; Michele Migliore; Robert A. McDougal; Michael L. Hines; Perry L. Miller (Encyclopedia of Computational Neuroscience, 2014)

YPED: An Integrated Bioinformatics Suite and Database for Mass Spectrometry-based Proteomics Research. - Christopher M. Colangelo; Mark A. Shifman; Kei-Hoi Cheung; Kathryn L. Stone; Nicholas Carriero; Erol E. Gulcicek; TuKiet T. Lam; Terence Wu; Robert D. Bjornson; Can Bruce; Angus C. Nairn; Jesse Rinehart; et al. (Genom. Proteom. Bioinform., 2015)

The center for expanded data annotation and retrieval. - Mark A. Musen; Carol A. Bean; Kei-Hoi Cheung; Michel Dumontier; Kim A. Durante; Olivier Gevaert; Alejandra N. González-Beltrán; Purvesh Khatri; Steven H. Kleinstein; Martin J. O'Connor; Yannick Pouliot; Philippe Rocca-Serra; et al. (J. Am. Medical Informatics Assoc., 2015)

Extending gene ontology in the context of extracellular RNA and vesicle communication. - Kei-Hoi Cheung; Shivakumar Keerthikumar; Paola Roncaglia; Sai Lakshmi Subramanian; Matthew E. Roth; Monisha Samuel; Sushma Anand; Lahiru Gangoda; Stephen Gould; Roger Alexander; David Galas; Mark B. Gerstein; et al. (J. Biomed. Semant., 2016)

A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling. - Roxanne Wadia; Mark A. Shifman; Forrest W. Levin; Luis N. Marenco; Cynthia Brandt; Kei-Hoi Cheung; Tamar H. Taddei; Michael Krauthammer (CRI, 2017)

Formalizing the Representation of Immune Exposures for Human Immunology Studies. - Randi Vita; Bjoern Peters; James A. Overton; Kei-Hoi Cheung; Steven H. Kleinstein (ICBO, 2018)

CEDAR: Semantic Web Technology to Support Open Science. - Mark A. Musen; Susanna-Assunta Sansone; Kei-Hoi Cheung; Steven H. Kleinstein; Morgan Crafts; Stephan C. Schürer; John B. Graybeal (WWW (Companion Volume), 2018)

CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. - Syed Ahmad Chan Bukhari; Marcos Martínez Romero; Martin J. O'Connor; Attila L. Egyedi; Debra Willrett; John B. Graybeal; Mark A. Musen; Kei-Hoi Cheung; Steven H. Kleinstein (BMC Bioinform., 2018)

A linked data graph approach to integration of immunological data. - Syed Ahmad Chan Bukhari; Jeff Mandell; Steven H. Kleinstein; Kei-Hoi Cheung (BIBM, 2019)

Reporting and connecting cell type names and gating definitions through ontologies. - James A. Overton; Randi Vita; Patrick Dunn; Julie G. Burel; Syed Ahmad Chan Bukhari; Kei-Hoi Cheung; Steven H. Kleinstein; Alexander D. Diehl; Bjoern Peters (BMC Bioinform., 2019)

A structured model for immune exposures. - Randi Vita; James A. Overton; Patrick Dunn; Kei-Hoi Cheung; Steven H. Kleinstein; Alessandro Sette; Bjoern Peters (Database J. Biol. Databases Curation, 2020)

LinkedImm: a linked data graph database for integrating immunological data. - Syed Ahmad Chan Bukhari; Shrikant Pawar; Jeff Mandell; Steven H. Kleinstein; Kei-Hoi Cheung (BMC Bioinform., 2021)

From Data to Wisdom: Biomedical Knowledge Graphs for Real-World Data Insights. - Katrin Hänsel; Sarah Dudgeon; Kei-Hoi Cheung; Thomas J. S. Durant; Wade L. Schulz (J. Medical Syst., 2023)

Chemical entity normalization for successful translational development of Alzheimer's disease and dementia therapeutics. - Sarah Mullin; Robert A. McDougal; Kei-Hoi Cheung; Halil Kilicoglu; Amanda Beck; Caroline J. Zeiss (J. Biomed. Semant., 2024)