Identifying Differentially Expressed Genes in cDNA Microarray Experiments. - Keith A. Baggerly; Kevin R. Coombes; Kenneth R. Hess; David N. Stivers; Lynne V. Abruzzo; Wei Zhang 011 (J. Comput. Biol., 2001)

Information-Theoretic Analysis of Neural Coding. - Don H. Johnson; Charlotte M. Gruner; Keith A. Baggerly; Chandran Seshagiri (J. Comput. Neurosci., 2001)

Identifying and Quantifying Sources of Variation in Microarray Data Using High-Density cDNA Membrane Arrays. - Kevin R. Coombes; W. Edward Highsmith; Tammy A. Krogmann; Keith A. Baggerly; David N. Stivers; Lynne V. Abruzzo (J. Comput. Biol., 2002)

Differential expression in SAGE: accounting for normal between-library variation. - Keith A. Baggerly; Li Deng; Jeffrey S. Morris; C. Marcelo Aldaz (Bioinform., 2003)

Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments. - Keith A. Baggerly; Jeffrey S. Morris; Kevin R. Coombes (Bioinform., 2004)

Overdispersed logistic regression for SAGE: Modelling multiple groups and covariates. - Keith A. Baggerly; Li Deng; Jeffrey S. Morris; C. Marcelo Aldaz (BMC Bioinform., 2004)

Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum. - Jeffrey S. Morris; Kevin R. Coombes; John M. Koomen; Keith A. Baggerly; Ryuji Kobayashi (Bioinform., 2005)

Non-parametric quantification of protein lysate arrays. - Jianhua Hu; Xuming He 002; Keith A. Baggerly; Kevin R. Coombes; Bryan T. J. Hennessy; Gordon B. Mills (Bioinform., 2007)

PrepMS: TOF MS data graphical preprocessing tool. - Yuliya V. Karpievitch; Elizabeth G. Hill; Adam J. Smolka; Jeffrey S. Morris; Kevin R. Coombes; Keith A. Baggerly; Jonas S. Almeida (Bioinform., 2007)

Short oligonucleotide probes containing G-stacks display abnormal binding affinity on Affymetrix microarrays. - Chunlei Wu; Haitao Zhao; Keith A. Baggerly; Roberto Carta; Li Zhang (Bioinform., 2007)

Variable slope normalization of reverse phase protein arrays. - E. Shannon Neeley; Steven M. Kornblau; Kevin R. Coombes; Keith A. Baggerly (Bioinform., 2009)

illuminaio: An open source IDAT parsing tool for Illumina microarrays. - Mike L. Smith; Keith A. Baggerly; Henrik Bengtsson; Matthew E. Ritchie; Kasper D. Hansen (F1000Research, 2013)

Optimized prediction of extreme treatment outcomes in ovarian cancer. - Burook Misganaw; Mehmet Eren Ahsen; Nitin K. Singh; Keith A. Baggerly; Anna Unruh; Michael A. White; Mathukumalli Vidyasagar (CDC, 2015)

Methylation-eQTL analysis in cancer research. - Yusha Liu; Keith A. Baggerly; Elias Orouji; Ganiraju Manyam; Huiqin Chen; Michael Lam; Jennifer S. Davis; Michael S. Lee; Bradley M. Broom; David G. Menter; Kunal Rai; Scott Kopetz; et al. (Bioinform., 2021)