Statistical Analysis of Molecular Signal Recording. - Joshua I. Glaser; Bradley M. Zamft; Adam H. Marblestone; Jeffrey R. Moffitt; Keith E. J. Tyo; Edward S. Boyden III; George M. Church; Konrad P. Körding (PLoS Comput. Biol., 2013)

Efficient searching and annotation of metabolic networks using chemical similarity. - Dante A. Pertusi; Andrew E. Stine; Linda J. Broadbelt; Keith E. J. Tyo (Bioinform., 2015)

MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics. - James G. Jeffryes; Ricardo L. Colastani; Mona Elbadawi-Sidhu; Tobias Kind; Thomas D. Niehaus; Linda J. Broadbelt; Andrew D. Hanson; Oliver Fiehn; Keith E. J. Tyo; Christopher S. Henry (J. Cheminformatics, 2015)

CellSort: a support vector machine tool for optimizing fluorescence-activated cell sorting and reducing experimental effort. - Jessica S. Yu; Dante A. Pertusi; Adebola V. Adeniran; Keith E. J. Tyo (Bioinform., 2017)

Nucleotide-time alignment for molecular recorders. - Thaddeus Cybulski; Edward S. Boyden; George M. Church; Keith E. J. Tyo; Konrad P. Körding (PLoS Comput. Biol., 2017)

Bayesian inference of metabolic kinetics from genome-scale multiomics data. - Peter C. St. John; Jonathan Strutz; Linda J. Broadbelt; Keith E. J. Tyo; Yannick J. Bomble (PLoS Comput. Biol., 2019)

MINE 2.0: enhanced biochemical coverage for peak identification in untargeted metabolomics. - Jonathan Strutz; Kevin M. Shebek; Linda J. Broadbelt; Keith E. J. Tyo (Bioinform., 2022)

Pickaxe: a Python library for the prediction of novel metabolic reactions. - Kevin M. Shebek; Jonathan Strutz; Linda J. Broadbelt; Keith E. J. Tyo (BMC Bioinform., 2023)