Learning Regulatory Network Models that Represent Regulator States and Roles. - Keith Noto; Mark Craven (Regulatory Genomics, 2004)

A specialized learner for inferring structured cis-regulatory modules. - Keith Noto; Mark Craven (BMC Bioinform., 2006)

Learning probabilistic models of cis-regulatory modules that represent logical and spatial aspects. - Keith Noto; Mark Craven (Bioinform., 2007)

Learning to Find Relevant Biological Articles without Negative Training Examples. - Keith Noto; Milton H. Saier Jr.; Charles Elkan (Australasian Conference on Artificial Intelligence, 2008)

Learning classifiers from only positive and unlabeled data. - Charles Elkan; Keith Noto (KDD, 2008)

Learning Hidden Markov Models for Regression using Path Aggregation. - Keith Noto; Mark Craven (UAI, 2008)

The Transporter Classification Database: recent advances. - Milton H. Saier Jr.; Ming Ren Yen; Keith Noto; Dorjee G. Tamang; Charles Elkan (Nucleic Acids Res., 2009)

Anomaly Detection Using an Ensemble of Feature Models. - Keith Noto; Carla E. Brodley; Donna K. Slonim (ICDM, 2010)

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. - Martin Krallinger; Miguel Vazquez; Florian Leitner; David Salgado; Andrew Chatr-aryamontri; Andrew G. Winter; Livia Perfetto; Leonardo Briganti; Luana Licata; Marta Iannuccelli; Luisa Castagnoli; Gianni Cesareni; et al. (BMC Bioinform., 2011)

Identifying Relevant Data for a Biological Database: Handcrafted Rules versus Machine Learning. - Aditya Kumar Sehgal; Sanmay Das; Keith Noto; Milton H. Saier Jr.; Charles Elkan (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

FRaC: a feature-modeling approach for semi-supervised and unsupervised anomaly detection. - Keith Noto; Carla E. Brodley; Donna K. Slonim (Data Min. Knowl. Discov., 2012)

CSAX: Characterizing Systematic Anomalies in eXpression Data. - Keith Noto; Carla E. Brodley; Saeed Majidi; Diana W. Bianchi; Donna K. Slonim (RECOMB, 2014)

Finding Novel Molecular Connections between Developmental Processes and Disease. - Jisoo Park; Heather C. Wick; Daniel E. Kee; Keith Noto; Jill L. Maron; Donna K. Slonim (PLoS Comput. Biol., 2014)

CSAX: Characterizing Systematic Anomalies in eXpression Data. - Keith Noto; Saeed Majidi; Andrea G. Edlow; Heather C. Wick; Diana W. Bianchi; Donna K. Slonim (J. Comput. Biol., 2015)

Ancestry inference using reference labeled clusters of haplotypes. - Yong Wang; Shiya Song; Joshua G. Schraiber; Alisa Sedghifar; Jake K. Byrnes; David A. Turissini; Eurie L. Hong; Catherine A. Ball; Keith Noto (BMC Bioinform., 2021)

Accurate genome-wide phasing from IBD data. - Keith Noto; Luong Ruiz (BMC Bioinform., 2022)