Decoding Coalescent Hidden Markov Models in Linear Time. - Kelley Harris; Sara Sheehan; John A. Kamm; Yun S. Song (RECOMB, 2014)

mutyper: assigning and summarizing mutation types for analyzing germline mutation spectra. - William S. DeWitt; Luke Zhu; Mitchell R. Vollger; Michael E. Goldberg; Andrea Talenti; Annabel C. Beichman; Kelley Harris (J. Open Source Softw., 2023)