Graphical technique for identifying a monotonic variance stabilizing transformation for absolute gene intensity signals. - Kellie J. Archer; Catherine I. Dumur; Viswanathan Ramakrishnan (BMC Bioinform., 2004)

An application for assessing quality of RNA hybridized to Affymetrix GeneChips. - Kellie J. Archer; Tobias Guennel (Bioinform., 2006)

SScore: an R package for detecting differential gene expression without gene expression summaries. - Richard E. Kennedy; Robnet T. Kerns; Xiangrong Kong; Kellie J. Archer; Michael F. Miles (Bioinform., 2006)

Empirical validation of the S-Score algorithm in the analysis of gene expression data. - Richard E. Kennedy; Kellie J. Archer; Michael F. Miles (BMC Bioinform., 2006)

Application of a correlation correction factor in a microarray cross-platform reproducibility study. - Kellie J. Archer; Catherine I. Dumur; G. Scott Taylor; Michael D. Chaplin; Anthony Guiseppi-Elie; Geraldine Grant; Andrea Ferreira-Gonzalez; Carleton T. Garrett (BMC Bioinform., 2007)

Goodness-of-fit tests for logistic regression models when data are collected using a complex sampling design. - Kellie J. Archer; Stanley Lemeshow; David W. Hosmer (Comput. Stat. Data Anal., 2007)

Empirical characterization of random forest variable importance measures. - Kellie J. Archer; Ryan V. Kimes (Comput. Stat. Data Anal., 2008)

Detection call algorithms for high-throughput gene expression microarray data. - Kellie J. Archer; Sarah E. Reese (Briefings Bioinform., 2010)

Identifying genes progressively silenced in preneoplastic and neoplastic liver tissues. - Kellie J. Archer; Zhongming Zhao; Tobias Guennel; Daniel G. Maluf; Robert A. Fisher; Valeria R. Mas (Int. J. Comput. Biol. Drug Des., 2010)

High-throughput DNA methylation datasets for evaluating false discovery rate methodologies. - N. Asomaning; Kellie J. Archer (Comput. Stat. Data Anal., 2012)

A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal component analysis. - Sarah E. Reese; Kellie J. Archer; Terry M. Therneau; Elizabeth J. Atkinson; Celine M. Vachon; Mariza de Andrade; Jean-Pierre A. Kocher; Jeanette E. Eckel-Passow (Bioinform., 2013)

Estimation of random effects and identifying heterogeneous genes in meta-analysis of gene expression studies. - Umaporn Siangphoe; Kellie J. Archer (Briefings Bioinform., 2017)

Classical and Bayesian random-effects meta-analysis models with sample quality weights in gene expression studies. - Umaporn Siangphoe; Kellie J. Archer; Nitai D. Mukhopadhyay (BMC Bioinform., 2019)

High-dimensional variable selection for ordinal outcomes with error control. - Han Fu; Kellie J. Archer (Briefings Bioinform., 2021)

Bayesian variable selection for high-dimensional data with an ordinal response: identifying genes associated with prognostic risk group in acute myeloid leukemia. - Yiran Zhang; Kellie J. Archer (BMC Bioinform., 2021)

High-dimensional genomic feature selection with the ordered stereotype logit model. - Anna Eames Seffernick; Krzysztof Mrózek; Deedra Nicolet; Richard M. Stone; Ann-Katherin Eisfeld; John C. Byrd; Kellie J. Archer (Briefings Bioinform., 2022)