Determining Optimal Features for Predicting Type IV Secretion System Effector Proteins for Coxiella burnetii. - Zhila Esna Ashari Esfahani; Kelly A. Brayton; Shira L. Broschat (BCB, 2017)

A Network Science Approach for Determining the Ancestral Phylum of Bacteria. - Ehdieh Khaledian; Assefaw H. Gebremedhin; Kelly A. Brayton; Shira L. Broschat (BCB, 2018)

A nearest-neighbors network model for sequence data reveals new insight into genotype distribution of a pathogen. - Helen N. Catanese; Kelly A. Brayton; Assefaw H. Gebremedhin (BMC Bioinform., 2018)

PASS: Protein Annotation Surveillance Site for Protein Annotation Using Homologous Clusters, NLP, and Sequence Similarity Networks. - Jin Tao; Kelly A. Brayton; Shira L. Broschat (Frontiers Bioinform., 2021)