VISTA : visualizing global DNA sequence alignments of arbitrary length. - Chris Mayor; Michael Brudno; Jody R. Schwartz; Alexander Poliakov; Edward M. Rubin; Kelly A. Frazer; Lior Pachter; Inna Dubchak (Bioinform., 2000)

VISTA: computational tools for comparative genomics. - Kelly A. Frazer; Lior Pachter; Alexander Poliakov; Edward M. Rubin; Inna Dubchak (Nucleic Acids Res., 2004)

A Covering Method for Detecting Genetic Associations between Rare Variants and Common Phenotypes. - Gaurav Bhatia; Vikas Bansal 001; Olivier Harismendy; Nicholas J. Schork; Eric J. Topol; Kelly A. Frazer; Vineet Bafna (PLoS Comput. Biol., 2010)

Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs. - Marcus Kinsella; Olivier Harismendy; Masakazu Nakano; Kelly A. Frazer; Vineet Bafna (Bioinform., 2011)

Mutascope: sensitive detection of somatic mutations from deep amplicon sequencing. - Shawn E. Yost; Hakan Alakus; Hiroko Matsui; Richard B. Schwab; Kristen Jepsen; Kelly A. Frazer; Olivier Harismendy (Bioinform., 2013)

Network-based analysis identifies epigenetic biomarkers of esophageal squamous cell carcinoma progression. - Chun-Pei Cheng; I-Ying Kuo; Hakan Alakus; Kelly A. Frazer; Olivier Harismendy; Yi-Ching Wang; Vincent S. Tseng (Bioinform., 2014)

Effective filtering strategies to improve data quality from population-based whole exome sequencing studies. - Andrew R. Carson; Erin N. Smith; Hiroko Matsui; Sigrid K. Brækkan; Kristen Jepsen; John-Bjarne Hansen; Kelly A. Frazer (BMC Bioinform., 2014)

MiningABs: mining associated biomarkers across multi-connected gene expression datasets. - Chun-Pei Cheng; Christopher M. DeBoever; Kelly A. Frazer; Yu-Cheng Liu; Vincent S. Tseng (BMC Bioinform., 2014)

Transcriptome Sequencing Reveals Potential Mechanism of Cryptic 3' Splice Site Selection in SF3B1-mutated Cancers. - Christopher M. DeBoever; Emanuela M. Ghia; Peter J. Shepard; Laura Rassenti; Christian L. Barrett; Kristen Jepsen; Catriona H. M. Jamieson; Dennis Carson; Thomas J. Kipps; Kelly A. Frazer (PLoS Comput. Biol., 2015)

Pgltools: a genomic arithmetic tool suite for manipulation of Hi-C peak and other chromatin interaction data. - William W. Greenwald; He Li; Erin N. Smith; Paola Benaglio; Naoki Nariai; Kelly A. Frazer (BMC Bioinform., 2017)

Low-Power 256-Channel Nanowire Electrode-on-Chip Neural Interface for Intracellular Electrophysiology. - Jun Wang 040; Ren Liu; Youngbin Tchoe; Alessio Paolo Buccino; Akshay Paul; Agnieszka D'Antonio-Chronowska; Kelly A. Frazer; Chul Kim; Shadi A. Dayeh; Gert Cauwenberghs (BioCAS, 2021)

In heart failure reactivation of RNA-binding proteins is associated with the expression of 1, 523 fetal-specific isoforms. - Matteo D'Antonio; Jennifer P. Nguyen; Timothy D. Arthur; Hiroko Matsui; Margaret K. R. Donovan; Agnieszka D'Antonio-Chronowska; Kelly A. Frazer (PLoS Comput. Biol., 2022)

Low-Power Fully Integrated 256-Channel Nanowire Electrode-on-Chip Neural Interface for Intracellular Electrophysiology. - Jun Wang 040; Ren Liu; Youngbin Tchoe; Alessio Paolo Buccino; Akshay Paul; Deborah Pre; Agnieszka D'Antonio-Chronowska; Kelly A. Frazer; Anne G. Bang; Chul Kim; Shadi A. Dayeh; Gert Cauwenberghs (IEEE Trans. Biomed. Circuits Syst., 2025)