Successive State Transitions with I/O Interface by Molecules. - Ken Komiya; Kensaku Sakamoto; Hidetaka Gouzu; Shigeyuki Yokoyama; Masanori Arita; Akio Nishikawa; Masami Hagiya (DNA Computing, 2000)

Improving Sequence Design for DNA Computing. - Masanori Arita; Akio Nishikawa; Masami Hagiya; Ken Komiya; Hidetaka Gouzu; Kensaku Sakamoto (GECCO, 2000)

Complexity analysis of the SAT engine: DNA algorithms as probabilistic algorithms. - Masami Hagiya; John A. Rose; Ken Komiya; Kensaku Sakamoto (Theor. Comput. Sci., 2002)

Branching DNA machines based on transitions of hairpin structures. - Mitsuhiro Kubota; Kazumasa Ohtake; Ken Komiya; Kensaku Sakamoto; Masami Hagiya (IEEE Congress on Evolutionary Computation, 2003)

Experimental Validation of the Statistical Thermodynamic Model for Prediction of the Behavior of Autonomous Molecular Computers Based on DNA Hairpin Formation. - Ken Komiya; Satsuki Yaegashi; Masami Hagiya; Akira Suyama; John A. Rose (DNA, 2006)

Displacement Whiplash PCR: Optimized Architecture and Experimental Validation. - John A. Rose; Ken Komiya; Satsuki Yaegashi; Masami Hagiya (DNA, 2006)

An implementation of Aqueous memory molecules with light responsive DNAs. - Masayuki Yamamura; Noriko Hirayama; Ken Komiya (IEEE Congress on Evolutionary Computation, 2007)

An Interface for a Computing Model Using Methylation to Allow Precise Population Control by Quantitative Monitoring. - Ken Komiya; Noriko Hirayama; Masayuki Yamamura (DNA, 2007)

A Realization of DNA Molecular Machine That Walks Autonomously by Using a Restriction Enzyme. - Hiroyuki Sekiguchi; Ken Komiya; Daisuke Kiga; Masayuki Yamamura (DNA, 2007)

Experimental Validation of Signal Dependent Operation in Whiplash PCR. - Ken Komiya; Masayuki Yamamura; John A. Rose (DNA, 2008)

A design and feasibility study of reactions comprising DNA molecular machine that walks autonomously by using a restriction enzyme. - Hiroyuki Sekiguchi; Ken Komiya; Daisuke Kiga; Masayuki Yamamura (Nat. Comput., 2008)

Experimental validation and optimization of signal dependent operation in whiplash PCR. - Ken Komiya; Masayuki Yamamura; John A. Rose (Nat. Comput., 2010)

Molecular Computing Machineries - Computing Models and Wet Implementations. - Masami Hagiya; Satoshi Kobayashi; Ken Komiya; Fumiaki Tanaka; Takashi Yokomori (Handbook of Natural Computing, 2012)

Cascading DNA Generation Reaction for Controlling DNA Nanomachines at a Physiological Temperature. - Ken Komiya; Masayuki Yamamura (New Gener. Comput., 2015)

Analysis and design of a single-molecule DNA nanodevice for thermal band-pass filters. - John A. Rose; Ken Komiya (NEMS, 2016)

Monotonically controlling right linear grammars with unknown behaviors to output a target string. - Nobuya Kimoto; Ken Komiya; Kenzo Fujimoto; Satoshi Kobayashi (Theor. Comput. Sci., 2019)

Reducing control alphabet size for the control of right linear grammars with unknown behaviors. - Nobuya Kimoto; Shigetaka Nakamura; Ken Komiya; Kenzo Fujimoto; Satoshi Kobayashi (Theor. Comput. Sci., 2021)

Monotone Control of R Systems. - Ryutaro Yako; Daihei Ise; Ken Komiya; Kenzo Fujimoto; Satoshi Kobayashi (New Gener. Comput., 2022)

Characterization of Cascaded DNA Generation Reaction for Amplifying DNA Signal. - Ken Komiya; Chizuru Noda; Masayuki Yamamura (New Gener. Comput., 2024)