Deep Spatio-Temporal Architectures and Learning for Protein Structure Prediction. - Pietro Di Lena; Pierre Baldi; Ken Nagata (NIPS, 2012)

Deep architectures for protein contact map prediction. - Pietro di Lena; Ken Nagata; Pierre Baldi (Bioinform., 2012)

Incorporating post-translational modifications and unnatural amino acids into high-throughput modeling of protein structures. - Ken Nagata; Arlo Z. Randall; Pierre Baldi (Bioinform., 2014)