Bayesian estimation of phase response curves. - Ken Nakae; Yukito Iba; Yasuhiro Tsubo; Tomoki Fukai; Toshio Aoyagi (Neural Networks, 2010)

Microscopic image restoration based on tensor factorization of rotated patches. - Masayuki Kouno; Ken Nakae; Shigeyuki Oba; Shin Ishii (Artif. Life Robotics, 2013)

A Statistical Method of Identifying Interactions in Neuron-Glia Systems Based on Functional Multicell Ca2+ Imaging. - Ken Nakae; Yuji Ikegaya; Tomoe Ishikawa; Shigeyuki Oba; Hidetoshi Urakubo; Masanori Koyama; Shin Ishii (PLoS Comput. Biol., 2014)

Principal Sensitivity Analysis. - Sotetsu Koyamada; Masanori Koyama; Ken Nakae; Shin Ishii (PAKDD (1), 2015)

Deep learning of fMRI big data: a novel approach to subject-transfer decoding. - Sotetsu Koyamada; Yumi Shikauchi; Ken Nakae; Masanori Koyama; Shin Ishii (CoRR, 2015)

Distributional Smoothing by Virtual Adversarial Examples. - Takeru Miyato; Shin-ichi Maeda; Masanori Koyama; Ken Nakae; Shin Ishii (ICLR (Poster), 2016)

Uncertainty-Dependent Extinction of Fear Memory in an Amygdala-mPFC Neural Circuit Model. - Yu-zhe Li; Ken Nakae; Shin Ishii; Honda Naoki (PLoS Comput. Biol., 2016)

MarmoNet: a pipeline for automated projection mapping of the common marmoset brain from whole-brain serial two-photon tomography. - Henrik Skibbe; Akiya Watakabe; Ken Nakae; Carlos Enrique Gutierrez; Hiromichi Tsukada; Junichi Hata; Takashi Kawase; Rui Gong; Alexander Woodward; Kenji Doya; Hideyuki Okano; Tetsuo Yamamori; et al. (CoRR, 2019)

Semi-supervised deep learning of brain tissue segmentation. - Ryo Ito; Ken Nakae; Junichi Hata; Hideyuki Okano; Shin Ishii (Neural Networks, 2019)

PAT - Probabilistic Axon Tracking for Densely Labeled Neurons in Large 3-D Micrographs. - Henrik Skibbe; Marco Reisert; Ken Nakae; Akiya Watakabe; Junichi Hata; Hiroaki Mizukami; Hideyuki Okano; Tetsuo Yamamori; Shin Ishii (IEEE Trans. Medical Imaging, 2019)

A 2D Cortical Flat Map Space for Computationally Efficient Mammalian Brain Simulation. - Alexander Woodward; Rui Gong; Ken Nakae; Patrice Delmas (ACIVS, 2023)

Group Surrogate Data Generating Models and similarity quantification of multivariate time-series: A resting-state fMRI study. - Takuto Okuno; Junichi Hata; Yawara Haga; Kanako Muta; Hiromichi Tsukada; Ken Nakae; Hideyuki Okano; Alexander Woodward (NeuroImage, 2023)