Gramene: a bird's eye view of cereal genomes. - Pankaj Jaiswal; Junjian Ni; Immanuel Yap; Doreen Ware; William Spooner; Ken Youens-Clark; Liya Ren; Chengzhi Liang; Wei Zhao 005; Kiran Ratnapu; Benjamin Faga; Payan Canaran; et al. (Nucleic Acids Res., 2006)

Gramene: a growing plant comparative genomics resource. - Chengzhi Liang; Pankaj Jaiswal; Claire Hebbard; Shuly Avraham; Edward S. Buckler; Terry M. Casstevens; Bonnie L. Hurwitz; Susan McCouch; Junjian Ni; Anuradha Pujar; Dean Ravenscroft; Liya Ren; et al. (Nucleic Acids Res., 2008)

Gramene QTL database: development, content and applications. - Junjian Ni; Anuradha Pujar; Ken Youens-Clark; Immanuel Yap; Pankaj Jaiswal; Isaak Y. Tecle; Chih-Wei Tung; Liya Ren; William Spooner; Xuehong Wei; Shuly Avraham; Doreen Ware; et al. (Database J. Biol. Databases Curation, 2009)

CMap 1.01: a comparative mapping application for the Internet. - Ken Youens-Clark; Benjamin Faga; Immanuel Yap; Lincoln Stein; Doreen Ware (Bioinform., 2009)

BioMart Central Portal: an open database network for the biological community. - Jonathan M. Guberman; Jiye Ai; Olivier Arnaiz; Joachim Baran; Andrew Blake 003; Richard A. Baldock; Claude Chelala; David Croft 001; Anthony Cros; Rosalind J. Cutts; Alex Di Génova; Simon A. Forbes; et al. (Database J. Biol. Databases Curation, 2011)

Gramene database in 2010: updates and extensions. - Ken Youens-Clark; Edward S. Buckler; Terry M. Casstevens; Charles Chen; Genevieve DeClerck; Paul S. Derwent; Palitha Dharmawardhana; Pankaj Jaiswal; Paul J. Kersey; A. S. Karthikeyan; Jerry Lu; Susan McCouch; et al. (Nucleic Acids Res., 2011)

GrameneMart: the BioMart data portal for the Gramene project. - William Spooner; Ken Youens-Clark; Daniel M. Staines; Doreen Ware (Database J. Biol. Databases Curation, 2012)

Ensembl Genomes 2013: scaling up access to genome-wide data. - Paul Julian Kersey; James E. Allen; Mikkel B. Christensen; Paul Davis 001; Lee J. Falin; Christoph Grabmueller; Daniel Seth Toney Hughes; Jay C. Humphrey; Arnaud Kerhornou; Julia Khobova; Nicholas Langridge; Mark D. McDowall; et al. (Nucleic Acids Res., 2014)

Gramene 2013: comparative plant genomics resources. - Marcela K. Monaco; Joshua C. Stein; Sushma Naithani; Sharon Wei; Palitha Dharmawardhana; Sunita Kumari; Vindhya Amarasinghe; Ken Youens-Clark; James Thomason; Justin Preece; Shiran Pasternak; Andrew Olson; et al. (Nucleic Acids Res., 2014)

The BioMart community portal: an innovative alternative to large, centralized data repositories. - Damian Smedley; Syed Haider; Steffen Durinck; Luca Pandini; Paolo Provero; James E. Allen; Olivier Arnaiz; Mohammad Hamza Awedh; Richard A. Baldock; Giulia Barbiera; Philippe Bardou; Tim Beck; et al. (Nucleic Acids Res., 2015)

Libra: Improved Partitioning Strategies for Massive Comparative Metagenomics Analysis. - Illyoung Choi; Alise J. Ponsero; Ken Youens-Clark; Matthew Bomhoff; Bonnie L. Hurwitz; John H. Hartman (ScienceCloud@HPDC, 2018)

Identification and quantitation of clinically relevant microbes in patient samples: Comparison of three k-mer based classifiers for speed, accuracy, and sensitivity. - George S. Watts; James E. Thornton Jr.; Ken Youens-Clark; Alise J. Ponsero; Marvin J. Slepian; Emmanuel Menashi; Charles Hu; Wuquan Deng; David G. Armstrong; Spenser Reed; Lee D. Cranmer; Bonnie L. Hurwitz (PLoS Comput. Biol., 2019)

Planet Microbe: a platform for marine microbiology to discover and analyze interconnected 'omics and environmental data. - Alise J. Ponsero; Matthew Bomhoff; Kai Lewis Blumberg; Ken Youens-Clark; Nina M. Herz; Elisha M. Wood-Charlson; Edward F. Delong; Bonnie L. Hurwitz (Nucleic Acids Res., 2021)