Segmenting Sentences into Linky Strings Using D-bigram Statistics. - Shiho Nobesawa; Junya Tsutsumi; Sun Da Jiang; Tomohisa Sano; Kengo Sato; Masakazu Nakanishi (COLING, 1996)

Maximum Entropy Model Learning of the Translation Rules. - Kengo Sato; Masakazu Nakanishi (COLING-ACL, 1998)

Extracting Word Sequence Correspondences with Support Vector Machines. - Kengo Sato; Hiroaki Saito 001 (COLING, 2002)

Preferential Presentation of Japanese Near-synonyms using Definition Statements. - Hiroyuki Okamoto; Kengo Sato; Hiroaki Saito 001 (IWP@ACL, 2003)

RNA secondary structural alignment with conditional random fields. - Kengo Sato; Yasubumi Sakakibara (ECCB/JBI, 2005)

Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures. - Hiroshi Matsui; Kengo Sato; Yasubumi Sakakibara (Bioinform., 2005)

Stem Kernels for RNA Sequence Analyses. - Yasubumi Sakakibara; Kiyoshi Asai; Kengo Sato (BIRD, 2007)

Stem Kernels for RNA Sequence Analyses. - Yasubumi Sakakibara; Kris Popendorf; Nana Ogawa; Kiyoshi Asai; Kengo Sato (J. Bioinform. Comput. Biol., 2007)

Directed acyclic graph kernels for structural RNA analysis. - Kengo Sato; Toutai Mituyama; Kiyoshi Asai; Yasubumi Sakakibara (BMC Bioinform., 2008)

Software.ncrna.org: web servers for analyses of RNA sequences. - Kiyoshi Asai; Hisanori Kiryu; Michiaki Hamada; Yasuo Tabei; Kengo Sato; Hiroshi Matsui; Yasubumi Sakakibara; Goro Terai; Toutai Mituyama (Nucleic Acids Res., 2008)

Sequence and Structural Analyses for Functional Non-coding RNAs. - Yasubumi Sakakibara; Kengo Sato (Algorithmic Bioprocesses, 2009)

Prediction of RNA secondary structure using generalized centroid estimators. - Michiaki Hamada; Hisanori Kiryu; Kengo Sato; Toutai Mituyama; Kiyoshi Asai (Bioinform., 2009)

Predictions of RNA secondary structure by combining homologous sequence information. - Michiaki Hamada; Kengo Sato; Hisanori Kiryu; Toutai Mituyama; Kiyoshi Asai (Bioinform., 2009)

CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score. - Michiaki Hamada; Kengo Sato; Hisanori Kiryu; Toutai Mituyama; Kiyoshi Asai (Bioinform., 2009)

CENTROIDFOLD: a web server for RNA secondary structure prediction. - Kengo Sato; Michiaki Hamada; Kiyoshi Asai; Toutai Mituyama (Nucleic Acids Res., 2009)

Improved prediction of transcription binding sites from chromatin modification data. - Kengo Sato; Tom Whitington; Timothy L. Bailey; Paul Horton (CIBCB, 2010)

Improvement of Structure Conservation Index with Centroid Estimators. - Yohei Okada; Kengo Sato; Yasubumi Sakakibara (Pacific Symposium on Biocomputing, 2010)

RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming. - Yuki Kato; Kengo Sato; Michiaki Hamada; Yoshihide Watanabe; Kiyoshi Asai; Tatsuya Akutsu (Bioinform., 2010)

Prediction of RNA secondary structure by maximizing pseudo-expected accuracy. - Michiaki Hamada; Kengo Sato; Kiyoshi Asai (BMC Bioinform., 2010)

Robust and accurate prediction of noncoding RNAs from aligned sequences. - Yutaka Saito; Kengo Sato; Yasubumi Sakakibara (BMC Bioinform., 2010)

A Non-Parametric Bayesian Approach for Predicting RNA Secondary Structures. - Kengo Sato; Michiaki Hamada; Toutai Mituyama; Kiyoshi Asai; Yasubumi Sakakibara (J. Bioinform. Comput. Biol., 2010)

IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming. - Kengo Sato; Yuki Kato; Michiaki Hamada; Tatsuya Akutsu; Kiyoshi Asai (Bioinform., 2011)

Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures. - Yutaka Saito; Kengo Sato; Yasubumi Sakakibara (BMC Bioinform., 2011)

Using binding Profiles to Predict binding sites of Target RNAs. - Unyanee Poolsap; Yuki Kato; Kengo Sato; Tatsuya Akutsu (J. Bioinform. Comput. Biol., 2011)

Improving the accuracy of predicting secondary structure for aligned RNA sequences. - Michiaki Hamada; Kengo Sato; Kiyoshi Asai (Nucleic Acids Res., 2011)

CentroidHomfold-LAST: accurate prediction of RNA secondary structure using automatically collected homologous sequences. - Michiaki Hamada; Koichiro Yamada; Kengo Sato; Martin C. Frith; Kiyoshi Asai (Nucleic Acids Res., 2011)

COPICAT: a software system for predicting interactions between proteins and chemical compounds. - Yasubumi Sakakibara; Tsuyoshi Hachiya; Miho Uchida; Nobuyoshi Nagamine; Yohei Sugawara; Masahiro Yokota; Masaomi Nakamura; Kris Popendorf; Takashi Komori; Kengo Sato (Bioinform., 2012)

DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition. - Kengo Sato; Yuki Kato; Tatsuya Akutsu; Kiyoshi Asai; Yasubumi Sakakibara (Bioinform., 2012)

An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds. - Masaomi Nakamura; Tsuyoshi Hachiya; Yutaka Saito; Kengo Sato; Yasubumi Sakakibara (BMC Bioinform., 2012)

Rtips: fast and accurate tools for RNA 2D structure prediction using integer programming. - Yuki Kato; Kengo Sato; Kiyoshi Asai; Tatsuya Akutsu (Nucleic Acids Res., 2012)

Endogenous Bioactive Peptides as Potential Biomarkers for Atherosclerotic Coronary Heart Disease. - Takuya Watanabe 003; Kengo Sato; Fumiko Itoh; Kohei Wakabayashi; Masayoshi Shichiri; Tsutomu Hirano (Sensors, 2012)

High-frame-rate LED display with pulse-width modulation by use of nonlinear clock. - Toyotaro Tokimoto; Kengo Sato; Shiro Suyama; Hirotsugu Yamamoto (GCCE, 2013)

A Machine Learning Based Approach to de novo Sequencing of Glycans from Tandem Mass Spectrometry Spectrum. - Shotaro Kumozaki; Kengo Sato; Yasubumi Sakakibara (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

SHARAKU: an algorithm for aligning and clustering read mapping profiles of deep sequencing in non-coding RNA processing. - Mariko Tsuchiya; Kojiro Amano; Masaya Abe; Misato Seki; Sumitaka Hase; Kengo Sato; Yasubumi Sakakibara (Bioinform., 2016)

Rtools: a web server for various secondary structural analyses on single RNA sequences. - Michiaki Hamada; Yukiteru Ono; Hisanori Kiryu; Kengo Sato; Yuki Kato; Tsukasa Fukunaga; Ryota Mori; Kiyoshi Asai (Nucleic Acids Res., 2016)

An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data. - Yuki Kato; Tomoya Mori; Kengo Sato; Shingo Maegawa; Hiroshi Hosokawa; Tatsuya Akutsu (Bioinform., 2017)

Convolutional neural network based on SMILES representation of compounds for detecting chemical motif. - Maya Hirohara; Yutaka Saito; Yuki Koda; Kengo Sato; Yasubumi Sakakibara (BMC Bioinform., 2018)

A max-margin training of RNA secondary structure prediction integrated with the thermodynamic model. - Manato Akiyama; Kengo Sato; Yasubumi Sakakibara (J. Bioinform. Comput. Biol., 2018)

Introduction to Selected Papers from GIW2018. - Jinyan Li 001; Kenta Nakai; Yun Zheng; Kengo Sato; Limsoon Wong (J. Bioinform. Comput. Biol., 2018)

Neural correlates of head restraint: Unsolicited neuronal activation and dopamine release. - Tomoo Inubushi; Masanori Ito; Yutaro Mori; Masami Futatsubashi; Kengo Sato; Shigeru Ito; Masamichi Yokokura; Tomomi Shinke; Yosuke Kameno; Akihiro Kakimoto; Toshihiko Kanno; Hiroyuki Okada; et al. (NeuroImage, 2021)

E.S.P.: Extra-Sensory Puck in Air Hockey using the Projection-Based Illusion. - Kengo Sato; Hiroki Terashima; Shin'ya Nishida; Yoshihiro Watanabe (SIGGRAPH ASIA Emerging Technologies, 2022)

Prediction of RNA secondary structure including pseudoknots for long sequences. - Kengo Sato; Yuki Kato (Briefings Bioinform., 2022)

Integer programming for selecting set of informative markers in paternity inference. - Soichiro Nishiyama; Kengo Sato; Ryutaro Tao (BMC Bioinform., 2022)

Recent trends in RNA informatics: a review of machine learning and deep learning for RNA secondary structure prediction and RNA drug discovery. - Kengo Sato; Michiaki Hamada (Briefings Bioinform., 2023)