An fMRI study of temporal sequencing of motor regulation guided by an auditory cue - a comparison with visual guidance. - Toshiharu Nakai; Kayako Matsuo; Yuko Ohgami; Kenichi Oishi; Chikako Kato (Cogn. Process., 2005)

Stereotaxic white matter atlas based on diffusion tensor imaging in an ICBM template. - Susumu Mori; Kenichi Oishi; Hangyi Jiang; Li Jiang; Xin Li 007; Kazi Akhter; Kegang Hua; Andreia V. Faria; Asif Mahmood; Roger P. Woods; Arthur W. Toga; G. Bruce Pike; et al. (NeuroImage, 2008)

Human brain white matter atlas: Identification and assignment of common anatomical structures in superficial white matter. - Kenichi Oishi; Karl Zilles; Katrin Amunts; Andreia Faria; Hangyi Jiang; Xin Li 007; Kazi Akhter; Kegang Hua; Roger P. Woods; Arthur W. Toga; G. Bruce Pike; Pedro Rosa-Neto; et al. (NeuroImage, 2008)

Multi-contrast large deformation diffeomorphic metric mapping for diffusion tensor imaging. - Can Ceritoglu; Kenichi Oishi; Xin Li 007; Ming-Chung Chou; Laurent Younes; Marilyn S. Albert; Constantine G. Lyketsos; Peter C. M. van Zijl; Michael I. Miller; Susumu Mori (NeuroImage, 2009)

Atlas-based whole brain white matter analysis using large deformation diffeomorphic metric mapping: Application to normal elderly and Alzheimer's disease participants. - Kenichi Oishi; Andreia Faria; Hangyi Jiang; Xin Li 007; Kazi Akhter; Jiangyang Zhang; John T. Hsu; Michael I. Miller; Peter C. M. van Zijl; Marilyn S. Albert; Constantine G. Lyketsos; Roger P. Woods; et al. (NeuroImage, 2009)

Study of white matter anatomy and 3D tract reconstruction by diffusion tensor imaging. - Andreia Faria; Kenichi Oishi; Susumu Mori (Int. J. Imaging Syst. Technol., 2010)

Atlas-based analysis of neurodevelopment from infancy to adulthood using diffusion tensor imaging and applications for automated abnormality detection. - Andreia Faria; Jiangyang Zhang; Kenichi Oishi; Xin Li 007; Hangyi Jiang; Kazi Akhter; Laurent Hermoye; Seung-Koo Lee; Alexander Hoon; Elaine Stashinko; Michael I. Miller; Peter C. M. van Zijl; et al. (NeuroImage, 2010)

Atlas-guided tract reconstruction for automated and comprehensive examination of the white matter anatomy. - Yajing Zhang; Jiangyang Zhang; Kenichi Oishi; Andreia Faria; Hangyi Jiang; Xin Li 007; Kazi Akhter; Pedro Rosa-Neto; G. Bruce Pike; Alan C. Evans; Arthur W. Toga; Roger P. Woods; et al. (NeuroImage, 2010)

Superficially Located White Matter Structures Commonly Seen in the Human and the Macaque Brain with Diffusion Tensor Imaging. - Kenichi Oishi; Hao Huang 016; Takashi Yoshioka; Sarah H. Ying; David S. Zee; Karl Zilles; Katrin Amunts; Roger P. Woods; Arthur W. Toga; G. Bruce Pike; Pedro Rosa-Neto; Alan C. Evans; et al. (Brain Connect., 2011)

Diffuse Abnormality of Low to Moderately Organized White Matter in Schizophrenia. - Sarah A. J. Reading; Kenichi Oishi; Graham W. Redgrave; Julie McEntee; Megan Shanahan; Nadine Yoritomo; Laurent Younes; Susumu Mori; Michael I. Miller; Peter C. M. van Zijl; Russell L. Margolis; Christopher A. Ross (Brain Connect., 2011)

Erratum to "Quantitative analysis of brain pathology based on MRI and brain atlases - Applications for cerebral palsy" [NeuroImage 54/3 (2011) 1854-1861]. - Andreia Faria; Alexander Hoon; Elaine Stashinko; Xin Li 007; Hangyi Jiang; Ameneh Mashayekh; Kazi Akhter; John T. Hsu; Kenichi Oishi; Jiangyang Zhang; Michael I. Miller; Peter C. M. van Zijl; et al. (NeuroImage, 2011)

Quantitative analysis of brain pathology based on MRI and brain atlases - Applications for cerebral palsy. - Andreia Faria; Alexander Hoon; Elaine Stashinko; Xin Li 007; Hangyi Jiang; Ameneh Mashayekh; Kazi Akhter; John T. Hsu; Kenichi Oishi; Jiangyang Zhang; Michael I. Miller; Peter C. M. van Zijl; et al. (NeuroImage, 2011)

Multi-contrast human neonatal brain atlas: Application to normal neonate development analysis. - Kenichi Oishi; Susumu Mori; Pamela K. Donohue; Thomas Ernst 001; Lynn Anderson; Steven Buchthal; Andreia Faria; Hangyi Jiang; Xin Li 007; Michael I. Miller; Peter C. M. van Zijl; Linda Chang (NeuroImage, 2011)

Atlas-based analysis of resting-state functional connectivity: Evaluation for reproducibility and multi-modal anatomy-function correlation studies. - Andreia Faria; Suresh Joel; Yajing Zhang; Kenichi Oishi; Peter C. M. van Zijl; Michael I. Miller; James J. Pekar; Susumu Mori (NeuroImage, 2012)

Cortico-Cortical, Cortico-Striatal, and Cortico-Thalamic White Matter Fiber Tracts Generated in the Macaque Brain via Dynamic Programming. - J. Tilak Ratnanather; Rakesh M. Lal; Michael An; Clare B. Poynton; Muwei Li; Hangyi Jiang; Kenichi Oishi; Lynn D. Selemon; Susumu Mori; Michael I. Miller (Brain Connect., 2013)

High-throughput neuro-imaging informatics. - Michael I. Miller; Andreia V. Faria; Kenichi Oishi; Susumu Mori (Frontiers Neuroinformatics, 2013)

Tools for multiple granularity analysis of brain MRI data for individualized image analysis. - Aigerim Djamanakova; Xiaoying Tang 001; Xin Li 007; Andreia V. Faria; Can Ceritoglu; Kenichi Oishi; Argye E. Hillis; Marilyn S. Albert; Constantine G. Lyketsos; Michael I. Miller; Susumu Mori (NeuroImage, 2014)

A Bayesian approach to the creation of a study-customized neonatal brain atlas. - Yajing Zhang; Linda Chang; Can Ceritoglu; Jon Skranes; Thomas Ernst 001; Susumu Mori; Michael I. Miller; Kenichi Oishi (NeuroImage, 2014)

Evaluation of group-specific, whole-brain atlas generation using Volume-based Template Estimation (VTE): Application to normal and Alzheimer's populations. - Yajing Zhang; Jiangyang Zhang; Johnny T. C. Hsu; Kenichi Oishi; Andreia Faria; Marilyn S. Albert; Michael I. Miller; Susumu Mori (NeuroImage, 2014)

MRICloud: Delivering High-Throughput MRI Neuroinformatics as Cloud-Based Software as a Service. - Susumu Mori; Dan Wu; Can Ceritoglu; Yue Li; Anthony Kolasny; Marc Vaillant; Andreia V. Faria; Kenichi Oishi; Michael I. Miller (Comput. Sci. Eng., 2016)

Probabilistic maps of the white matter tracts with known associated functions on the neonatal brain atlas: Application to evaluate longitudinal developmental trajectories in term-born and preterm-born infants. - Kentaro Akazawa; Linda Chang; Robyn Yamakawa; Sara Hayama; Steven Buchthal; Daniel Alicata; Tamara Andres; Deborrah Castillo; Kumiko Oishi; Jon Skranes; Thomas Ernst 001; Kenichi Oishi (NeuroImage, 2016)

Mapping the critical gestational age at birth that alters brain development in preterm-born infants using multi-modal MRI. - Dan Wu; Linda Chang; Kentaro Akazawa; Kumiko Oishi; Jon Skranes; Thomas Ernst 001; Kenichi Oishi (NeuroImage, 2017)

Significant Dimension Reduction of 3D Brain MRI using 3D Convolutional Autoencoders. - Hayato Arai; Yusuke Chayama; Hitoshi Iyatomi; Kenichi Oishi (EMBC, 2018)

Efficient feature embedding of 3D brain MRI images for content-based image retrieval with deep metric learning. - Yuto Onga; Shingo Fujiyama; Hayato Arai; Yusuke Chayama; Hitoshi Iyatomi; Kenichi Oishi (IEEE BigData, 2019)

Age-specific gray and white matter DTI atlas for human brain at 33, 36 and 39 postmenstrual weeks. - Lei Feng; Hang Li; Kenichi Oishi; Virendra Mishra; Limei Song; Qinmu Peng; Minhui Ouyang; Jiaojian Wang; Michelle Slinger; Tina Jeon; Lizette Lee; Roy Heyne; et al. (NeuroImage, 2019)

Baby brain atlases. - Kenichi Oishi; Linda Chang; Hao Huang 016 (NeuroImage, 2019)

Age-specific optimization of T1-weighted brain MRI throughout infancy. - Hongxi Zhang; Can Lai; Ruibin Liu; Tingting Liu; Weiming Niu; Kenichi Oishi; Yi Zhang 080; Dan Wu (NeuroImage, 2019)

Disease-Oriented Image Embedding With Pseudo-Scanner Standardization for Content-Based Image Retrieval on 3D Brain MRI. - Hayato Arai; Yuto Onga; Kumpei Ikuta; Yusuke Chayama; Hitoshi Iyatomi; Kenichi Oishi (IEEE Access, 2021)

Loc-VAE: Learning Structurally Localized Representation from 3D Brain MR Images for Content-Based Image Retrieval. - Kei Nishimaki; Kumpei Ikuta; Yuto Onga; Hitoshi Iyatomi; Kenichi Oishi (SMC, 2022)

Acquiring a Low-Dimensional, Environment-Independent Representation of Brain MR Images for Content-Based Image Retrieval. - Shuya Tobari; Kenichi Oishi; Hitoshi Iyatomi (SMC, 2023)

PCSS: Skull Stripping With Posture Correction From 3D Brain MRI for Diverse Imaging Environment. - Kei Nishimaki; Kumpei Ikuta; Shingo Fujiyama; Kenichi Oishi; Hitoshi Iyatomi (IEEE Access, 2023)

Multi-modal multi-resolution atlas of the human neonatal cerebral cortex based on microstructural similarity. - Mingyang Li; Xinyi Xu; Zuozhen Cao; Ruike Chen; Ruoke Zhao; Zhiyong Zhao; Xixi Dang; Kenichi Oishi; Dan Wu (NeuroImage, 2023)

The Japan Monkey Centre Primates Brain Imaging Repository of high-resolution postmortem magnetic resonance imaging: The second phase of the archive of digital records. - Tomoko Sakai; Junichi Hata; Yuta Shintaku; Hiroki Ohta; Kazumi Sogabe; Susumu Mori; Takako Miyabe-Nishiwaki; Hirotaka James Okano; Yuzuru Hamada; Toshiyuki Hirabayashi; Takafumi Minamimoto; Norihiro Sadato; et al. (NeuroImage, 2023)

Isometric Feature Embedding for Content-Based Image Retrieval. - Hayato Muraki; Kei Nishimaki; Shuya Tobari; Kenichi Oishi; Hitoshi Iyatomi (CISS, 2024)

Domain-invariant feature learning in brain MR imaging for content-based image retrieval. - Shuya Tobari; Shuhei Tomoshige; Hayato Muraki; Kenichi Oishi; Hitoshi Iyatomi (CoRR, 2025)

iCBIR-Sli: Interpretable Content-Based Image Retrieval with 2D Slice Embeddings. - Shuhei Tomoshige; Hayato Muraki; Kenichi Oishi; Hitoshi Iyatomi (CoRR, 2025)

OpenMAP-BrainAge: Generalizable and Interpretable Brain Age Predictor. - Pengyu Kan; Craig Jones; Kenichi Oishi (CoRR, 2025)

Acquisition of interpretable domain information during brain MR image harmonization for content-based image retrieval. - Keima Abe; Hayato Muraki; Shuhei Tomoshige; Kenichi Oishi; Hitoshi Iyatomi (CoRR, 2025)