A deductive database system PACADE for analyzing 3-D and secondary structures of protein. - Kenji Satou; Emiko Furuichi; Kyoko Takiguchi; Toshihisa Takagi; Satoru Kuhara (Comput. Appl. Biosci., 1993)

Application of a Deductive Database System PACADE toward Discovery of Clusters of Similar Structures in Proteins. - Kenji Satou; Emiko Furuichi; Kyoko Takiguchi; Satoru Kuhara; Toshihisa Takagi (HICSS (5), 1994)

Data Classification Component in a Deductive Database System and Its Application to Protein Structural Analysis. - Akio Nishikawa; Kenji Satou; Emiko Furuichi; Satoru Kuhara; Kazuo Ushijima (IEICE Trans. Inf. Syst., 1995)

Extraction of Substructures of Proteins Essential to their Biological Functions by a Data Mining Technique. - Kenji Satou; Toshihide Ono; Yoshihisa Yamamura; Emiko Furuichi; Satoru Kuhara; Toshihisa Takagi (ISMB, 1997)

Application of a deductive database system to search for topological and similar three-dimensional structures in protein. - Y. Tsukamoto; Kyoko Takiguchi; Kenji Satou; Emiko Furuichi; Toshihisa Takagi; Satoru Kuhara (Comput. Appl. Biosci., 1997)

Extraction of knowledge on protein-protein interaction by association rule discovery. - T. Oyama; K. Kitano; Kenji Satou; Takashi Ito (Bioinform., 2002)

Prediction of Protein-Protein Interaction Sites Using Support Vector Machines. - Yohei Minakuchi; Kenji Satou; Akihiko Konagaya (METMBS, 2003)

Development of Support Tool for NMR Spectrum Analysis. - Shouji Tatsumoto; Kenji Satou; Akihiko Konagaya; Jun'ichi Kurita; Hideto Shimahara; Shin-ichi Tate (METMBS, 2003)

Improving the Identification of Non-Anaphoric it using Support Vector Machines. - José Carlos Clemente; Kenji Satou; Kentaro Torisawa (NLPBA/BioNLP, 2004)

An Integrated System for Distributed Bioinformatics Environment on Grids. - Kenji Satou; Yasuhiko Nakashima; Shin'ichi Tsuji; Xavier Défago; Akihiko Konagaya (LSGRID, 2004)

Drug Interaction Ontology (DIO) for Inferences of Possible Drug-drug Interactions. - Sumi Yoshikawa; Kenji Satou; Akihiko Konagaya (MedInfo, 2004)

Prediction of Protein Secondary Structure from PDB Structure Information Based on Sequence Segments Homology Searching. - Shouji Tatsumoto; Kenji Satou; Akihiko Konagaya (METMBS, 2004)

Utilizing weakly controlled vocabulary for sentence segmentation in biomedical literature. - Kenji Satou; Kaoru Yamamoto (Silico Biol., 2004)

The Superstructure toward Open Bioinformatics Grid. - Akihiko Konagaya; Fumikazu Konishi; Mariko Hatakeyama; Kenji Satou (New Gener. Comput., 2004)

Computational discovery of transcriptional regulatory rules. - Tho Hoan Pham; José Carlos Clemente; Kenji Satou; Tu Bao Ho (ECCB/JBI, 2005)

Contractive Conformational Change of Calmodulin Caused by the Central Linker: A Molecular Dynamics Simulation Study. - Kiyonobu Yokota; Hongzhen Li; Kenji Satou (METMBS, 2005)

Using Inductive Logic Programming for Predicting Protein-Protein Interactions from Multiple Genomic Data. - Tuan Nam Tran; Kenji Satou; Tu Bao Ho (PKDD, 2005)

Support Vector Machines for Prediction and Analysis of Beta and Gamma-turns in Proteins. - Tho Hoan Pham; Kenji Satou; Tu Bao Ho (J. Bioinform. Comput. Biol., 2005)

Conditional Random Fields for Predicting and Analyzing Histone Occupancy, Acetylation and Methylation Areas in DNA Sequences. - Dang Hung Tran; Tho Hoan Pham; Kenji Satou; Tu Bao Ho (EvoWorkshops, 2006)

Prediction of Histone Modifications in DNA sequences. - Tho Hoan Pham; Tu Bao Ho; Dang Hung Tran; Kenji Satou (BIBE, 2007)

Phylogenetic reconstruction from non-genomic data. - José Carlos Clemente; Kenji Satou; Gabriel Valiente (Bioinform., 2007)

Finding microRNA regulatory modules in human genome using rule induction. - Dang Hung Tran; Kenji Satou; Tu Bao Ho (BMC Bioinform., 2008)

An Identification Method of Data-Specific GO Terms from a Microarray Data Set. - Yoichi Yamada; Ken-ichi Hirotani; Kenji Satou; Ken-ichiro Muramoto (IEICE Trans. Inf. Syst., 2009)

MicroRNA Expression Profiles for Classification and Analysis of Tumor Samples. - Dang Hung Tran; Tu Bao Ho; Tho Hoan Pham; Kenji Satou (IEICE Trans. Inf. Syst., 2011)

EpicCapo: epitope prediction using combined information of amino acid pairwise contact potentials and HLA-peptide contact site information. - Thammakorn Saethang; Osamu Hirose; Ingorn Kimkong; Vu Anh Tran; Xuan Tho Dang; Thi Lan Anh Nguyen; Thi Tu Kien Le; Mamoru Kubo; Yoichi Yamada; Kenji Satou (BMC Bioinform., 2012)

IMPACT: A Novel Clustering Algorithm based on Attraction. - Vu Anh Tran; José Carlos Clemente; Duc Thuan Nguyen; Jiuyong Li; Xuan Tho Dang; Thi Tu Kien Le; Thi Lan Anh Nguyen; Thammakorn Saethang; Mamoru Kubo; Yoichi Yamada; Kenji Satou (J. Comput., 2012)

Inferring microRNA and transcription factor regulatory networks in heterogeneous data. - Thuc Duy Le; Lin Liu 003; Bing Liu 002; Anna Tsykin; Gregory J. Goodall; Kenji Satou; Jiuyong Li (BMC Bioinform., 2013)

Inference of domain-domain interactions by matrix factorisation and domain-level features. - Thi Tu Kien Le; Osamu Hirose; Thi Lan Anh Nguyen; Thammakorn Saethang; Vu Anh Tran; Xuan Tho Dang; Duc Luu Ngo; Mamoru Kubo; Yoichi Yamada; Kenji Satou (Int. J. Funct. Informatics Pers. Medicine, 2014)

Discovering statistically non-redundant subgroups. - Jiuyong Li; Jixue Liu; Hannu Toivonen; Kenji Satou; Youqiang Sun; Bing-Yu Sun (Knowl. Based Syst., 2014)

SPY: A Novel Resampling Method for Improving Classification Performance in Imbalanced Data. - Xuan Tho Dang; Dang Hung Tran; Osamu Hirose; Kenji Satou (KSE, 2015)

Clustering and Classification of Breathing Activities by Depth Image from Kinect. - Mera Kartika Delimayanti; Bedy Purnama; Ngoc Giang Nguyen; Kunti Robiatul Mahmudah; Mamoru Kubo; Makiko Kakikawa; Yoichi Yamada; Kenji Satou (BIOINFORMATICS, 2019)

Applying Deep Learning Models to Action Recognition of Swimming Mice with the Scarcity of Training Data. - Ngoc Giang Nguyen; Mera Kartika Delimayanti; Bedy Purnama; Kunti Robiatul Mahmudah; Mamoru Kubo; Makiko Kakikawa; Yoichi Yamada; Kenji Satou (BIOINFORMATICS, 2019)

On the Problem about Optical Flow Prediction for Silhouette Image. - Bedy Purnama; Mera Kartika Delimayanti; Ngoc Giang Nguyen; Kunti Robiatul Mahmudah; Mamoru Kubo; Makiko Kakikawa; Yoichi Yamada; Kenji Satou (BIOINFORMATICS, 2019)

Prediction of Subnuclear Location for Nuclear Protein. - Kenji Satou; Yoshiki Shimaguchi; Kunti Robiatul Mahmudah; Ngoc Giang Nguyen; Mera Kartika Delimayanti; Bedy Purnama; Mamoru Kubo; Makiko Kakikawa; Yoichi Yamada (BIOINFORMATICS, 2019)

Machine Learning Algorithms for Predicting Chronic Obstructive Pulmonary Disease from Gene Expression Data with Class Imbalance. - Kunti Robiatul Mahmudah; Bedy Purnama; Fatma Indriani; Kenji Satou (BIOINFORMATICS, 2021)

Identification of Key Gene Modules in Triple Negative Breast Cancer Cells Treated using Weighted Gene Co-Expression Network Analysis. - Lilies Handayani; Thanawat Tangpornpisit; Denis Chegodaev; Rik Raes; Kenji Satou (ICBBE, 2024)