DNA visual and analytic data mining. - Patrick Hoffman; Georges G. Grinstein; Kenneth A. Marx; Ivo Grosse; Eugene Stanley (IEEE Visualization, 1997)

Statistical mechanical simulation of polymeric DNA melting with MELTSIM. - Richard D. Blake; Jeff W. Bizzaro; Jonathan D. Blake; G. R. Day; S. G. Delcourt; J. Knowles; Kenneth A. Marx; J. SantaLucia Jr. (Bioinform., 1999)

Poly: a quantitative analysis tool for simple sequence repeat (SSR) tracts in DNA. - Jeff W. Bizzaro; Kenneth A. Marx (BMC Bioinform., 2003)

Data Mining the NCI Cancer Cell Line Compound GI50 Values: Identifying Quinone Subtypes Effective Against Melanoma and Leukemia Cell Classes. - Kenneth A. Marx; Philip O'Neil; Patrick Hoffman; M. L. Ujwal (J. Chem. Inf. Comput. Sci., 2003)

Evidence for Proximal to Distal Appendage Amputation Site Effects from Global Gene Expression Correlations Found in Newt Microarrays. - Kenneth A. Marx; John Sharko; Georges G. Grinstein; Shannon Odelberg; Hans-Georg Simon (BIBE, 2007)

A Machine Learning Approach to Pharmacological Profiling of the Quinone Scaffold in the NCI Database: A Compound Class Enriched in Those Effective Against Melanoma and Leukemia Cell Lines. - M. L. Ujwal; Patrick Hoffman; Kenneth A. Marx (BIBE, 2007)

Heat Map Visualizations Allow Comparison of Multiple Clustering Results and Evaluation of Dataset Quality: Application to Microarray Data. - John Sharko; Georges G. Grinstein; Kenneth A. Marx; Jianping Zhou 002; Chia-Ho Cheng; Shannon Odelberg; Hans-Georg Simon (IV, 2007)

Vectorized Radviz and Its Application to Multiple Cluster Datasets. - John Sharko; Georges G. Grinstein; Kenneth A. Marx (IEEE Trans. Vis. Comput. Graph., 2008)

A visual approach to improve clustering based on cluster ensembles. - Jianping Zhou 002; Shawn Konecni; Kenneth A. Marx; Georges G. Grinstein (VDA, 2010)

A heuristic for gene selection and visual prediction of sample type. - Jianping Zhou 002; Georges G. Grinstein; Kenneth A. Marx (Int. J. Data Min. Bioinform., 2011)

SOP-GPU: influence of solvent-induced hydrodynamic interactions on dynamic structural transitions in protein assemblies. - Andrey Alekseenko; Olga Kononova; Yaroslav Kholodov; Kenneth A. Marx; Valeri Barsegov (J. Comput. Chem., 2016)

Fluctuating Nonlinear Spring Model of Mechanical Deformation of Biological Particles. - Olga Kononova; Joost Snijder; Yaroslav Kholodov; Kenneth A. Marx; Gijs J. L. Wuite; Wouter H. Roos; Valeri Barsegov (PLoS Comput. Biol., 2016)

CellDynaMo-stochastic reaction-diffusion-dynamics model: Application to search-and-capture process of mitotic spindle assembly. - Evgenii Kliuchnikov; Artem A. Zhmurov; Kenneth A. Marx; Alex Mogilner; Valeri Barsegov (PLoS Comput. Biol., 2022)