YMD: a microarray database for large-scale gene expression analysis. - Kei-Hoi Cheung; Kevin P. White; Janet Hager; Mark Gerstein; Valerie Reinke; Kenneth Nelson; Peter Masiar; Ranjana Srivastava; Yuli Li; Ju Li; Hongyu Zhao 003; Jinming Li; et al. (AMIA, 2002)

A dynamic approach to mapping coordinates between microplates and microarrays. - Kei-Hoi Cheung; Janet Hager; Kenneth Nelson; Kevin P. White; Yuli Li; Michael Snyder 001; Kenneth R. Williams; Perry L. Miller (J. Biomed. Informatics, 2002)

Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data. - Baolin Wu; Tom Abbott; David Fishman; Walter McMurray; Gil Mor; Kathryn L. Stone; David Ward; Kenneth R. Williams; Hongyu Zhao 003 (Bioinform., 2003)

KARMA: a web server application for comparing and annotating heterogeneous microarray platforms. - Kei-Hoi Cheung; Janet Hager; Deyun Pan; Ranjana Srivastava; Shrikant M. Mane; Yuli Li; Perry L. Miller; Kenneth R. Williams (Nucleic Acids Res., 2004)

YPED: A Proteomics Database for Protein Expression Analysis. - Mark A. Shifman; Kexin Sun; Christopher M. Colangelo; Kei-Hoi Cheung; Perry L. Miller; Kenneth R. Williams (AMIA, 2005)

Case Report: A High Productivity/Low Maintenance Approach to High-performance Computation for Biomedicine: Four Case Studies. - Nicholas Carriero; Michael V. Osier; Kei-Hoi Cheung; Perry L. Miller; Mark Gerstein; Hongyu Zhao 003; Baolin Wu; Scott Rifkin; Joseph T. Chang; Heping Zhang; Kevin P. White; Kenneth R. Williams; et al. (J. Am. Medical Informatics Assoc., 2005)

Detecting and aligning peaks in mass spectrometry data with applications to MALDI. - Weichuan Yu; Baolin Wu; Ning Lin; Kathy Stone; Kenneth R. Williams; Hongyu Zhao 003 (Comput. Biol. Chem., 2006)

Multiple Peak Alignment in Sequential Data Analysis: A Scale-Space-Based Approach. - Weichuan Yu; Xiaoye Li; Junfeng Liu; Baolin Wu; Kenneth R. Williams; Hongyu Zhao 003 (IEEE ACM Trans. Comput. Biol. Bioinform., 2006)

YPED: An Integrated Bioinformatics Suite and Database for Mass Spectrometry-based Proteomics Research. - Christopher M. Colangelo; Mark A. Shifman; Kei-Hoi Cheung; Kathryn L. Stone; Nicholas Carriero; Erol E. Gulcicek; TuKiet T. Lam; Terence Wu; Robert D. Bjornson; Can Bruce; Angus C. Nairn; Jesse Rinehart; et al. (Genom. Proteom. Bioinform., 2015)

ProteomicsBrowser: MS/proteomics data visualization and investigation. - Gang Peng 004; Rashaun Wilson; Yishuo Tang; TuKiet T. Lam; Angus C. Nairn; Kenneth R. Williams; Hongyu Zhao 003 (Bioinform., 2019)