Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves. - Kenneth W. Berendzen; Kurt Stüber; Klaus Harter; Dierk Wanke (BMC Bioinform., 2006)

Modeling gene regulation and spatial organization of sequence based motifs. - Jochen Supper; Claas aufm Kampe; Dierk Wanke; Kenneth W. Berendzen; Klaus Harter; Richard Bonneau; Andreas Zell (BIBE, 2008)

ModuleMaster: A new tool to decipher transcriptional regulatory networks. - Clemens Wrzodek; Adrian Schröder; Andreas Dräger; Dierk Wanke; Kenneth W. Berendzen; Marcel Kronfeld; Klaus Harter; Andreas Zell (Biosyst., 2010)

Inferring transcriptional regulators for sets of co-expressed genes by multi-objective evolutionary optimization. - Adrian Schröder; Clemens Wrzodek; Johannes Wollnik; Andreas Dräger; Dierk Wanke; Kenneth W. Berendzen; Andreas Zell (IEEE Congress on Evolutionary Computation, 2011)