Exploring hierarchical refinement techniques for induced fit docking with protein and ligand flexibility. - Kenneth W. Borrelli; Benjamin P. Cossins; Victor Guallar (J. Comput. Chem., 2010)

Testing Physical Models of Passive Membrane Permeation. - Siegfried S. F. Leung; Jona Mijalkovic; Kenneth W. Borrelli; Matthew P. Jacobson (J. Chem. Inf. Model., 2012)

Structure-Based Virtual Screening Approach for Discovery of Covalently Bound Ligands. - Dora Toledo Warshaviak; Gali Golan; Kenneth W. Borrelli; Kai Zhu; Ori Kalid (J. Chem. Inf. Model., 2014)

Docking Covalent Inhibitors: A Parameter Free Approach To Pose Prediction and Scoring. - Kai Zhu; Kenneth W. Borrelli; Jeremy R. Greenwood; Tyler Day; Robert Abel; Ramy Farid; Edward Harder (J. Chem. Inf. Model., 2014)

Improving Accuracy, Diversity, and Speed with Prime Macrocycle Conformational Sampling. - Daniel J. Sindhikara; Steven A. Spronk; Tyler Day; Kenneth W. Borrelli; Daniel L. Cheney; Shana L. Posy (J. Chem. Inf. Model., 2017)